View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21203_low_5 (Length: 423)
Name: NF21203_low_5
Description: NF21203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21203_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 11 - 404
Target Start/End: Original strand, 34876471 - 34876858
Alignment:
| Q |
11 |
cacagaagaacccctcatagttgccatgattatgtcaaattctcctactgcataaatatgtcaccgtcgcaccaaatttatcaacacagttagaataata |
110 |
Q |
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| T |
34876471 |
cacagaagaacccctcatagttgccatgattatgtcaaattctccttctgcataaatatgtcaccgtcacaccaaaattatcaa-----------taata |
34876559 |
T |
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| Q |
111 |
acagtatatgtgacagaaggataactaatataagcagatgaatcgacaagagctgaatctctttggatcgtgtaacgaaaacttnnnnnnnnnn-----t |
205 |
Q |
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| T |
34876560 |
acagtatatgtgacagaaggataactaatataagcagatgaatcgacaagagctgaatctctatggatcgtgtaacgaaaacttaaaaaaaaataaaaat |
34876659 |
T |
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| Q |
206 |
tagttagagattaaatttacagtaattgattactcaccagtgctcctggagagtgtacctgataacaatgatcagaagggtggtattttgtagtggaaga |
305 |
Q |
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| T |
34876660 |
tagttagagactaaagttacagtaattgattactcaccagtgctcctggagagtgtacctgctaacaatgatcagaagggtggtattttgtagtggaaga |
34876759 |
T |
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| Q |
306 |
agaagaagagtgtaacccaacatggcctactacattttgacacgtggaagaatgagtaatttcatgcgtacacatacacttcatcattgttgattgtgg |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34876760 |
agaagaagagtgtaacccaacatggcctactacattttgacacgtggaagaatgagtaatttcatgcgtacacatacacttcatcattgttgatagtgg |
34876858 |
T |
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