View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21203_low_6 (Length: 408)

Name: NF21203_low_6
Description: NF21203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21203_low_6
NF21203_low_6
[»] chr4 (6 HSPs)
chr4 (18-396)||(53499097-53499473)
chr4 (75-395)||(53492793-53493124)
chr4 (75-269)||(53495316-53495510)
chr4 (75-271)||(53502342-53502538)
chr4 (78-262)||(52590974-52591158)
chr4 (72-190)||(53488628-53488746)
[»] chr7 (2 HSPs)
chr7 (75-272)||(37188853-37189050)
chr7 (108-166)||(32709835-32709893)
[»] chr3 (2 HSPs)
chr3 (108-223)||(38214051-38214166)
chr3 (108-223)||(38218270-38218385)
[»] chr2 (2 HSPs)
chr2 (75-265)||(16942593-16942783)
chr2 (75-265)||(17013258-17013448)
[»] chr8 (1 HSPs)
chr8 (108-196)||(35018054-35018142)


Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 18 - 396
Target Start/End: Complemental strand, 53499473 - 53499097
Alignment:
Q  18 ggttttgatgatgatttgcatgatgattttccaccgttccatatacaagcattgttggcattgaagtttctgtaagaagcagtgaaaggagctttggacc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53499473 ggttttgatgatgatttgcatgatgattttccaccgttccatatacaagcattgttggcattgaagtttctgtaagaagcagtgaaaggagctttggacc 53499374  T
Q  118 aatctgtcttaacaagtcctcctcttgttgcccaatcatcagcattccagagacttgagtatatcctcattggttggtttttggggaatggtacaccatt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53499373 aatctgtcttaacaagtcctcctcttgttgcccaatcatcagcattccagagacttgagtatatcctcattggttggtttttggggaatggtacaccatt 53499274  T
Q  218 tgattccatgttcttgaattctctaattggagttccatccacagagaaactgaaataaatatacacagagagaatagtctaatttagtttcttccaacac 317  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||||    ||| ||||||| ||| ||||||||||||||||| |||| |||||    
T  53499273 tgattccatgttcttgaattccctaattggagttccatctacagagaaactg----aaaaatacacaaagaaaatagtctaatttagttgcttcgaacac 53499178  T
Q  318 aagtaatg--nnnnnnnnnnnattgattttattttaagattgtatagaatatattgatttagtacttacacaatacgttga 396  Q
    ||| ||||             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53499177 aagcaatgtttttttttttttattgattttattttaagattgtatagaatatattgatttagtacttacacaatacgttga 53499097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 75 - 395
Target Start/End: Complemental strand, 53493124 - 53492793
Alignment:
Q  75 gcattgaagtttctgtaagaagcagtgaaaggagctttggaccaatctgtcttaacaagtcctcctcttgttgcccaatcatcagcattccagagacttg 174  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53493124 gcattgaagtgtctgtaagaagcagtgaaaggagctttggaccaatctgtcttaacaagtcctcctcttgttgcccaatcatcagcattccagagacttg 53493025  T
Q  175 agtatatcctcattggttggtttttggggaatggtacaccatttgattccatgttcttgaattctctaattggagttccatccacagagaaactgaaata 274  Q
    |||||||||||||||||||||||||||||||||| || ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53493024 agtatatcctcattggttggtttttggggaatggaacgccacttgattcaatgttcttgaattctctaattggagttccatccacagagaaactgaaata 53492925  T
Q  275 aatatacacagagagaatagtctaatttagtttcttccaacacaagtaatg-----------nnnnnnnnnnnattgattttattttaagattgtataga 363  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||                      ||||||||||||| |||||||||||||    
T  53492924 aatatacacagagagaatagtctaatttagtttcttccaacacaagtaatgtttttttttttaaattttttttattgattttatttcaagattgtataga 53492825  T
Q  364 atatattgatttagtacttacacaatacgttg 395  Q
    |||||||||||||| |||||||||||||||||    
T  53492824 atatattgatttagaacttacacaatacgttg 53492793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 75 - 269
Target Start/End: Complemental strand, 53495510 - 53495316
Alignment:
Q  75 gcattgaagtttctgtaagaagcagtgaaaggagctttggaccaatctgtcttaacaagtcctcctcttgttgcccaatcatcagcattccagagacttg 174  Q
    |||||||| || || || || |||||||| ||||| || | |||||||||||| ||||| || ||||||||||||||||||||||||||||| |||||||    
T  53495510 gcattgaaattcctatatgatgcagtgaatggagcatttgtccaatctgtcttgacaagaccacctcttgttgcccaatcatcagcattccatagacttg 53495411  T
Q  175 agtatatcctcattggttggtttttggggaatggtacaccatttgattccatgttcttgaattctctaattggagttccatccacagagaaactg 269  Q
    | ||||||||||||||||| || || || ||||  || || |||||||||||||||||||||||||| ||||| |||||||||||||| ||||||    
T  53495410 aatatatcctcattggttgattctttggaaatgcaactccttttgattccatgttcttgaattctcttattggtgttccatccacagaaaaactg 53495316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 75 - 271
Target Start/End: Complemental strand, 53502538 - 53502342
Alignment:
Q  75 gcattgaagtttctgtaagaagcagtgaaaggagctttggaccaatctgtcttaacaagtcctcctcttgttgcccaatcatcagcattccagagacttg 174  Q
    ||||| || |||||||| ||||| ||||| ||||| || | |||||||||||| || ||||| |||||||||||||| | ||| |||||||| | |||||    
T  53502538 gcattaaaatttctgtaggaagctgtgaatggagcctttgtccaatctgtcttgactagtccacctcttgttgcccagttatctgcattccacaaacttg 53502439  T
Q  175 agtatatcctcattggttggtttttggggaatggtacaccatttgattccatgttcttgaattctctaattggagttccatccacagagaaactgaa 271  Q
    | ||||| |||||||||||||| || ||||| || |||||| | |  ||   ||||||||| |||||||| ||||| ||||| || ||||| |||||    
T  53502438 aatatattctcattggttggttctttgggaagggcacaccaatagtctctgagttcttgaactctctaatgggagtgccatcaactgagaatctgaa 53502342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 78 - 262
Target Start/End: Complemental strand, 52591158 - 52590974
Alignment:
Q  78 ttgaagtttctgtaagaagcagtgaaaggagctttggaccaatctgtcttaacaagtcctcctcttgttgcccaatcatcagcattccagagacttgagt 177  Q
    ||||||||||  || ||||||||||| || |||| ||||||||| || ||  | || ||||| ||||| ||||||| ||| |||| ||| |||||||| |    
T  52591158 ttgaagtttccatatgaagcagtgaatggggcttgggaccaatcagttttcgctagacctccccttgtggcccaattatctgcatcccaaagacttgaat 52591059  T
Q  178 atatcctcattggttggtttttggggaatggtacaccatttgattccatgttcttgaattctctaattggagttccatccacaga 262  Q
    |||| ||||||| |||| |||| || || || | ||| ||||||||||  ||||||||||| || | |||||| |||||||||||    
T  52591058 atatactcattgcttggcttttaggaaaaggaataccttttgattccaaattcttgaattcccttaatggagtcccatccacaga 52590974  T

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Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 72 - 190
Target Start/End: Original strand, 53488628 - 53488746
Alignment:
Q  72 ttggcattgaagtttctgtaagaagcagtgaaaggagctttggaccaatctgtcttaacaagtcctcctcttgttgcccaatcatcagcattccagagac 171  Q
    ||||| |||||||| ||  |||||||||| || |||||||    ||||||||| || ||||| || |||||||||||||||||||| |||||||| ||||    
T  53488628 ttggctttgaagttcctaaaagaagcagtaaatggagcttgattccaatctgttttcacaagaccacctcttgttgcccaatcatcggcattccatagac 53488727  T
Q  172 ttgagtatatcctcattgg 190  Q
    |||| ||||  ||||||||    
T  53488728 ttgaatataatctcattgg 53488746  T

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Target: chr7 (Bit Score: 138; Significance: 5e-72; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 75 - 272
Target Start/End: Complemental strand, 37189050 - 37188853
Alignment:
Q  75 gcattgaagtttctgtaagaagcagtgaaaggagctttggaccaatctgtcttaacaagtcctcctcttgttgcccaatcatcagcattccagagacttg 174  Q
    |||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||| |    
T  37189050 gcattgaagtttctataagaagcagtaaaaggagcattggaccaatctgtcttaacaagtccacctcttgtagcccaatcatcagcattccaaagactag 37188951  T
Q  175 agtatatcctcattggttggtttttggggaatggtacaccatttgattccatgttcttgaattctctaattggagttccatccacagagaaactgaaa 272  Q
    | || || |||||||||||| ||||||||||||| |||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||    
T  37188950 aatagattctcattggttggcttttggggaatggaacaccatttgattccatgtttttgaattccctaattggacttccatccacagagaaactgaaa 37188853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 108 - 166
Target Start/End: Complemental strand, 32709893 - 32709835
Alignment:
Q  108 gctttggaccaatctgtcttaacaagtcctcctcttgttgcccaatcatcagcattcca 166  Q
    ||||||||||||||||| ||  | | ||| |||||||||||||||||||| ||||||||    
T  32709893 gctttggaccaatctgttttctctaatccacctcttgttgcccaatcatctgcattcca 32709835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 108 - 223
Target Start/End: Original strand, 38214051 - 38214166
Alignment:
Q  108 gctttggaccaatctgtcttaacaagtcctcctcttgttgcccaatcatcagcattccagagacttgagtatatcctcattggttggtttttggggaatg 207  Q
    |||||||||||||| || || || |  || |||||||| ||||||||||||||||||||||||||||| || || |||||||||||||| || |||||||    
T  38214051 gctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcattccagagacttgaatagattctcattggttggttctttgggaatg 38214150  T
Q  208 gtacaccatttgattc 223  Q
    | | |||| |||||||    
T  38214151 gaataccaattgattc 38214166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 108 - 223
Target Start/End: Original strand, 38218270 - 38218385
Alignment:
Q  108 gctttggaccaatctgtcttaacaagtcctcctcttgttgcccaatcatcagcattccagagacttgagtatatcctcattggttggtttttggggaatg 207  Q
    |||||||||||||| || || || |  || |||||||| ||||||||||||||||||||||||||||| || || |||||||||||||| || |||||||    
T  38218270 gctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcattccagagacttgaatagattctcattggttggttctttgggaatg 38218369  T
Q  208 gtacaccatttgattc 223  Q
    | | |||| |||||||    
T  38218370 gaataccaattgattc 38218385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 75 - 265
Target Start/End: Complemental strand, 16942783 - 16942593
Alignment:
Q  75 gcattgaagtttctgtaagaagcagtgaaaggagctttggaccaatctgtcttaacaagtcctcctcttgttgcccaatcatcagcattccagagacttg 174  Q
    |||||||||||||| || || ||| |||| ||||| |||| ||||||||| || ||||  || ||||| || ||||||| ||| |||||||| |||||||    
T  16942783 gcattgaagtttctatatgaggcaatgaatggagcattggtccaatctgttttcacaatcccacctctagtggcccaattatctgcattccaaagacttg 16942684  T
Q  175 agtatatcctcattggttggtttttggggaatggtacaccatttgattccatgttcttgaattctctaattggagttccatccacagagaa 265  Q
    | ||||||||||| | |||||| || || || || || || |||||||| |  |||||||| || || |||||  ||||||||||||||||    
T  16942683 aatatatcctcatggcttggttctttggaaaaggaaccccttttgattctaaattcttgaactcccttattggtcttccatccacagagaa 16942593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 75 - 265
Target Start/End: Complemental strand, 17013448 - 17013258
Alignment:
Q  75 gcattgaagtttctgtaagaagcagtgaaaggagctttggaccaatctgtcttaacaagtcctcctcttgttgcccaatcatcagcattccagagacttg 174  Q
    |||||||||||||| || || ||| |||| ||||| |||| ||||||||| || ||||  || ||||| || ||||||| ||| |||||||| |||||||    
T  17013448 gcattgaagtttctatatgaggcaatgaatggagcattggtccaatctgttttcacaatcccacctctagtggcccaattatctgcattccaaagacttg 17013349  T
Q  175 agtatatcctcattggttggtttttggggaatggtacaccatttgattccatgttcttgaattctctaattggagttccatccacagagaa 265  Q
    | ||||||||||| | |||||| || || || || || || |||||||| |  |||||||| || || |||||  ||||||||||||||||    
T  17013348 aatatatcctcatggcttggttctttggaaaaggaaccccttttgattctaaattcttgaactcccttattggtcttccatccacagagaa 17013258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 108 - 196
Target Start/End: Complemental strand, 35018142 - 35018054
Alignment:
Q  108 gctttggaccaatctgtcttaacaagtcctcctcttgttgcccaatcatcagcattccagagacttgagtatatcctcattggttggtt 196  Q
    |||||||||||||| || || || | ||| |||||||| |||||||||||||||||||| || || || || || ||||||||||||||    
T  35018142 gctttggaccaatcagttttcaccaatccacctcttgtggcccaatcatcagcattccacaggctggaatagattctcattggttggtt 35018054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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