View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21203_low_7 (Length: 392)
Name: NF21203_low_7
Description: NF21203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21203_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 380
Target Start/End: Complemental strand, 34947188 - 34946809
Alignment:
| Q |
1 |
caacatcacaactccttgtctctaccactgatcattgtttatcttcaatggttcggttgctgaacagtccacctattgttggctcgtacaatcatttagg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
34947188 |
caacatcacaactccttgtctctaccactgatcattgtttatcttcaatggttcggttgctgaacattccacctattgttggctcgtacaatcatttagg |
34947089 |
T |
|
| Q |
101 |
gaaatggacttgtggagaggatctcacaattgttgagacggcattaggcccagaaagttattgggattttattcatgaaaattctgcatacttgaagagt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||| | |
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| T |
34947088 |
gaaatggacttgtggagaggatctcacaattgttgagactgcattaggccctgaaagttattgggattttattcatcaaaattcttcatacttgaagact |
34946989 |
T |
|
| Q |
201 |
tttaatgatgctatggaaagtgattctcatgttgtgaggttggccttgagagattgtaagtctgtttttgaagggattggttcattggttgatgttggtg |
300 |
Q |
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| T |
34946988 |
tttaatgatgctatggaaagtgattctcatgttgtgaggttggccttgagagattgtaagtctgtttttcaagggattggttcattggttgatgttggtg |
34946889 |
T |
|
| Q |
301 |
gtggaactggaaacacagctaagattatttgtgaggcgtttccagagttgaagtacactgtcttggaccttccacaggtt |
380 |
Q |
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| T |
34946888 |
gtggaactggaaacacagctaagattatatgtgaggcgtttccagagctgaagtacattgtcctggaccttccacaggtt |
34946809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 380
Target Start/End: Complemental strand, 34951659 - 34951280
Alignment:
| Q |
1 |
caacatcacaactccttgtctctaccactgatcattgtttatcttcaatggttcggttgctgaacagtccacctattgttggctcgtacaatcatttagg |
100 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| || |||||| | |||||||||||||||| |
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| T |
34951659 |
caacatcacaactccttgtctctgacactgatcattgtttatcttcaatggttcggttgctgaacactccaactcttgttgacgcgtacaatcatttagg |
34951560 |
T |
|
| Q |
101 |
gaaatggacttgtggagaggatctcacaattgttgagacggcattaggcccagaaagttattgggattttattcatgaaaattctgcatacttgaagagt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34951559 |
gaaatggacttgtggagaggatctcacaattgttgagaccgcattaggcccagaaagttattgggattttattcatgaaaattctgcatacttgaagagt |
34951460 |
T |
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| Q |
201 |
tttaatgatgctatggaaagtgattctcatgttgtgaggttggccttgagagattgtaagtctgtttttgaagggattggttcattggttgatgttggtg |
300 |
Q |
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| T |
34951459 |
tttaatgatgctatggaaagtgattctcatgttgtgaggttggctttgagagattgtaattctgtttttgaagggattggttcattggttgatgttggtg |
34951360 |
T |
|
| Q |
301 |
gtggaactggaaacacagctaagattatttgtgaggcgtttccagagttgaagtacactgtcttggaccttccacaggtt |
380 |
Q |
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| T |
34951359 |
gtggaactggaaacacagctaagattatttgtgaggcgtttccagagctgaagtacactgtcttggaccttccacaggtt |
34951280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 204 - 343
Target Start/End: Complemental strand, 8074887 - 8074748
Alignment:
| Q |
204 |
aatgatgctatggaaagtgattctcatgttgtgaggttggccttgagagattgtaagtctgtttttgaagggattggttcattggttgatgttggtggtg |
303 |
Q |
| |
|
|||||||||||||||||||||||| || | |||||||| || |||| ||||| || || |||||||| || | ||| |||||||||||||| |||| |
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| T |
8074887 |
aatgatgctatggaaagtgattctaatatggtgaggtttgcaatgagtgattgcaaatcagtttttgagggcttaacttcgttggttgatgttggaggtg |
8074788 |
T |
|
| Q |
304 |
gaactggaaacacagctaagattatttgtgaggcgtttcc |
343 |
Q |
| |
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|||| |||||||| | ||| |||||||||||||||||||| |
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| T |
8074787 |
gaaccggaaacactgttaaaattatttgtgaggcgtttcc |
8074748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 343
Target Start/End: Complemental strand, 8066452 - 8066313
Alignment:
| Q |
204 |
aatgatgctatggaaagtgattctcatgttgtgaggttggccttgagagattgtaagtctgtttttgaagggattggttcattggttgatgttggtggtg |
303 |
Q |
| |
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|||||||||||||| ||||| ||| || | ||||||| || |||| ||||| || || |||||||| || || ||| |||||||||||||| |||| |
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| T |
8066452 |
aatgatgctatggagagtgactctaatatgatgaggtttgcaatgagtgattgcaaatcagtttttgagggcataacttctttggttgatgttggaggtg |
8066353 |
T |
|
| Q |
304 |
gaactggaaacacagctaagattatttgtgaggcgtttcc |
343 |
Q |
| |
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|||| |||||||| | ||| ||||||| |||||||||||| |
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| T |
8066352 |
gaaccggaaacacggttaaaattatttctgaggcgtttcc |
8066313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 267 - 352
Target Start/End: Original strand, 34343578 - 34343663
Alignment:
| Q |
267 |
tttgaagggattggttcattggttgatgttggtggtggaactggaaacacagctaagattatttgtgaggcgtttccagagttgaa |
352 |
Q |
| |
|
||||||||||||| ||| | || |||||||||||||||||||||| |||||||| ||||| |||||||| ||||| ||||||| |
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| T |
34343578 |
tttgaagggattgattctattgtggatgttggtggtggaactggaaccacagctagaattatatgtgaggcttttcctaagttgaa |
34343663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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