View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21204_high_3 (Length: 276)
Name: NF21204_high_3
Description: NF21204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21204_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 38316448 - 38316187
Alignment:
| Q |
1 |
gttaaagatatcctattaggaatgctagccaattcttgtttaagctttagtttctctttcgtgtacaaatgcgaaacataagcctcaataacatttgtcg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38316448 |
gttaaagatatcctattaggaatgctagccaattcttgtttaagctttagtttctctttcgtgtacaaatgcgaaacataagcctcaataacatttgtcg |
38316349 |
T |
|
| Q |
101 |
gaggtataacagcatttggatttaagaactcagtgtacttcctcattacctcgagctccaaaaaattaaagggcaaatcatgtgcaaggatcatagaagc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38316348 |
gaggtataacagcatttggatttaagaactcagtgtacttcctcattacctcgagctccaaaaaattaaagggcaaatcatgtgcaaggatcatagaagc |
38316249 |
T |
|
| Q |
201 |
gcatatacccgcaaattgtgattccctttgttctacctcgttatcaaattccatattttctt |
262 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38316248 |
gcatatacccgcaaattgtgattccctttgttctacctcgttatcaaattccatattttctt |
38316187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 38325293 - 38325094
Alignment:
| Q |
1 |
gttaaagatatcctattaggaatgctagccaattcttgtttaagctttagtttctctttcgtgtacaaatgcgaaacataagcctcaataacatttgtcg |
100 |
Q |
| |
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|||||||||| ||||||||||||| ||||||||| |||||||||||| |||||||||| |||||||||| | ||||||||||||||||||||||| | |
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| T |
38325293 |
gttaaagataccctattaggaatggtagccaattgttgtttaagcttagatttctctttcatgtacaaatgagtgacataagcctcaataacatttgtag |
38325194 |
T |
|
| Q |
101 |
gaggtataacagcatttggatttaagaactcagtgtacttcctcattacctcgagctccaaaaaattaaagggcaaatcatgtgcaaggatcatagaagc |
200 |
Q |
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| T |
38325193 |
gaggtataacagcatttcgatttaaagtctcagtgtacctcctcattccctcgtgctccaaaaaatcaaagggtaaatcaagtgcaaggatcatagaagc |
38325094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 38320546 - 38320347
Alignment:
| Q |
1 |
gttaaagatatcctattaggaatgctagccaattcttgtttaagctttagtttctctttcgtgtacaaatgcgaaacataagcctcaataacatttgtcg |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| || ||||||||||| |||||| ||||||||||||||| ||| |||||||||| |||||||||| | | |
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| T |
38320546 |
gttaaagatatcctattaggaatggtagccaaatcctgtttaagcttgagtttcgctttcgtgtacaaatccgagacataagccttaataacatttatag |
38320447 |
T |
|
| Q |
101 |
gaggtataacagcatttggatttaagaactcagtgtacttcctcattacctcgagctccaaaaaattaaagggcaaatcatgtgcaaggatcatagaagc |
200 |
Q |
| |
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|||| |||||||||||||||||||||| || || | || ||||| ||||| |||| ||||||| |||||| ||||||| || ||||||||||||||| |
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| T |
38320446 |
gaggcataacagcatttggatttaagaccttcatgaagttactcataccctcgcgctcaaaaaaatcaaagggaaaatcatttgaaaggatcatagaagc |
38320347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 38305720 - 38305514
Alignment:
| Q |
1 |
gttaaagatatcctattaggaatgctagccaattcttgtttaagctttagtttctctttcgtgtacaaatgcgaaacataagcctcaataacatttgtcg |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||| |||| || ||||||||||||||||||| | | |
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| T |
38305720 |
gttaaagatatcctattaggaatggtagccaattcttgtttaagcttcagtttctctttcatgtataaatcagagacataagcctcaataacatctacag |
38305621 |
T |
|
| Q |
101 |
gaggtataacagcatttggatttaagaactcagtgtacttcctcattacctcgagctccaaaaaattaaagggcaaatcatgtgcaaggatcatagaagc |
200 |
Q |
| |
|
|||| | |||| |||||||||||||| || || | |||||||| ||||| |||| ||||| | |||||| ||||||| || ||||||||||||||| |
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|
| T |
38305620 |
gaggcaaaacaatatttggatttaagaccttcatgaagttcctcatcccctcgcgctcaaaaaactcaaagggaaaatcatttgaaaggatcatagaagc |
38305521 |
T |
|
| Q |
201 |
gcatata |
207 |
Q |
| |
|
|||||| |
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|
| T |
38305520 |
acatata |
38305514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 38313039 - 38312910
Alignment:
| Q |
1 |
gttaaagatatcc----tattaggaatgctagccaattcttgtttaagctttagtttctctttcgtgtacaaatgcgaaacataagcctcaataacattt |
96 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||||| |||||||| ||||||| ||||||||||||| || ||||||||||||| ||||||| |
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| T |
38313039 |
gttaaagatatcctatttattaggaatggtagccaattcttgcttaagcttgagtttctgattcgtgtacaaatcggagacataagcctcaagaacattt |
38312940 |
T |
|
| Q |
97 |
gtcggaggtataacagcatttggatttaag |
126 |
Q |
| |
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| ||||| |||||| |||||||||||||| |
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| T |
38312939 |
gaaggaggcataacaacatttggatttaag |
38312910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 38308453 - 38308385
Alignment:
| Q |
1 |
gttaaagatatcctattaggaatgctagccaattcttgtttaagctttagtttctctttcgtgtacaaa |
69 |
Q |
| |
|
|||||||||||| ||| ||||||| |||||| || |||||| ||||| ||||||||| |||||||||| |
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| T |
38308453 |
gttaaagatatcttataaggaatggtagccagttgttgtttgagcttatgtttctcttccgtgtacaaa |
38308385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 38299801 - 38299732
Alignment:
| Q |
1 |
gttaaagatatcctattaggaatgctagccaattcttgtttaagctttagtttctctttcgtgtacaaat |
70 |
Q |
| |
|
||||||||||||||||||||||| |||||| | |||||||| || |||||||||| |||||||||| |
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| T |
38299801 |
gttaaagatatcctattaggaatagtagccagctgttgtttaatattgagtttctcttcagtgtacaaat |
38299732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 126; Significance: 5e-65; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 3 - 264
Target Start/End: Original strand, 38850899 - 38851160
Alignment:
| Q |
3 |
taaagatatcctattaggaatgctagccaattcttgtttaagctttagtttctctttcgtgtacaaatgcgaaacataagcctcaataacatttgtcgga |
102 |
Q |
| |
|
|||||||||||||||||||||| ||| |||| |||||||||||| |||||||||||||||||||||| ||||| ||||| || ||||||||| | ||| |
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| T |
38850899 |
taaagatatcctattaggaatggtagttaattgttgtttaagcttaggtttctctttcgtgtacaaatgtgaaacgtaagcttcgataacatttctagga |
38850998 |
T |
|
| Q |
103 |
ggtataacagcatttggatttaagaactcagtgtacttcctcattacctcgagctccaaaaaattaaagggcaaatcatgtgcaaggatcatagaagcgc |
202 |
Q |
| |
|
|||||| | |||||||||||||||||| | ||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||| ||||||| | |
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| T |
38850999 |
ggtataggaatatttggatttaagaactcggagtacttcctcattccctcgagctcgaaaaaatgaaagggcaaatcatgtgcaaggatcgtagaagcac |
38851098 |
T |
|
| Q |
203 |
atatacccgcaaattgtgattccctttgttctacctcgttatcaaattccatattttcttcg |
264 |
Q |
| |
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|||| || |||| |||| ||| |||| ||||| |||||||||||||| || ||||||||| |
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| T |
38851099 |
atatttccacaaagcgtgaatccatttgatctacttcgttatcaaattctatcttttcttcg |
38851160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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