View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21204_high_4 (Length: 236)
Name: NF21204_high_4
Description: NF21204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21204_high_4 |
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| [»] chr8 (7 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 13 - 236
Target Start/End: Complemental strand, 38317005 - 38316782
Alignment:
| Q |
13 |
agtgaaaactttcaaatacatgccgatatttaagagcactttcaagcatcacataagttgagttcagactcatagacatgtccagatgcaggcgaacaga |
112 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
38317005 |
agtgaaaactttcaaatacatgccgatatttaagagcactttcaagcatcacataagttgagttcagactcatagacatgtccagatgcaggcaaacaga |
38316906 |
T |
|
| Q |
113 |
actatcaacaccaccaaccttttcaatgcactccttaaattttgtccttctattttttgaattcctcacaaacatgatgctgtctcgaattccatacacg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38316905 |
actatcaacaccaccaaccttttcaatgcactccttaaattttgtccttctattttttgaattcctcacaaacatgatgctgtctcgaattccatacacg |
38316806 |
T |
|
| Q |
213 |
gcaccactaactagttttaacccc |
236 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
38316805 |
gcaccactaactagttttaacccc |
38316782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 13 - 236
Target Start/End: Complemental strand, 38306274 - 38306051
Alignment:
| Q |
13 |
agtgaaaactttcaaatacatgccgatatttaagagcactttcaagcatcacataagttgagttcagactcatagacatgtccagatgcaggcgaacaga |
112 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||||| || ||||||| |||||||||||||| | ||||||||||||||| ||||| |||||| || |
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| T |
38306274 |
agtgaaaactttcaaacacatgttgatatttaagagcactatcgagcatcaaataagttgagttcacagtcatagacatgtccatatgcaagcgaactga |
38306175 |
T |
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| Q |
113 |
actatcaacaccaccaaccttttcaatgcactccttaaattttgtccttctattttttgaattcctcacaaacatgatgctgtctcgaattccatacacg |
212 |
Q |
| |
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||| |||| ||||||||||||||||| |||||||||||||||| |||||||| | ||||||| ||||||||||| |||||| |||| |||| | ||||| |
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| T |
38306174 |
actgtcaataccaccaaccttttcaacgcactccttaaattttttccttctactctttgaatccctcacaaacaagatgctctctctaattttagacacg |
38306075 |
T |
|
| Q |
213 |
gcaccactaactagttttaacccc |
236 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
38306074 |
tcaccactaactagttttaacccc |
38306051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 13 - 235
Target Start/End: Complemental strand, 38325850 - 38325628
Alignment:
| Q |
13 |
agtgaaaactttcaaatacatgccgatatttaagagcactttcaagcatcacataagttgagttcagactcatagacatgtccagatgcaggcgaacaga |
112 |
Q |
| |
|
|||||| ||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||| |||||| || |
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| T |
38325850 |
agtgaagactttcaaacacacgccgatatttaagagcactttcaagcatcaaataagttgagttcagactcatagacgagtcctgatgcaagcgaacgga |
38325751 |
T |
|
| Q |
113 |
actatcaacaccaccaaccttttcaatgcactccttaaattttgtccttctattttttgaattcctcacaaacatgatgctgtctcgaattccatacacg |
212 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||||||||| ||||||| | ||||||| |||||||||||||||||| |||| |||| ||||| |
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| T |
38325750 |
actatcgacaccaccaaccttttcaatgcattccttaaatttctcccttctactctttgaatgcctcacaaacatgatgctctctctaatttttgacacg |
38325651 |
T |
|
| Q |
213 |
gcaccactaactagttttaaccc |
235 |
Q |
| |
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||| ||||||||||||| ||||| |
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| T |
38325650 |
gcatcactaactagtttcaaccc |
38325628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 13 - 229
Target Start/End: Complemental strand, 38309002 - 38308786
Alignment:
| Q |
13 |
agtgaaaactttcaaatacatgccgatatttaagagcactttcaagcatcacataagttgagttcagactcatagacatgtccagatgcaggcgaacaga |
112 |
Q |
| |
|
|||||| |||||||||| || || |||||||||||||||||| |||||||| |||||||||||||| |||||||||||||| ||||||| |||||||| |
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| T |
38309002 |
agtgaagactttcaaatgcaagctgatatttaagagcactttgaagcatcaaataagttgagttcactctcatagacatgtctagatgcaaacgaacaga |
38308903 |
T |
|
| Q |
113 |
actatcaacaccaccaaccttttcaatgcactccttaaattttgtccttctattttttgaattcctcacaaacatgatgctgtctcgaattccatacacg |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||| | | ||||| |||||||||||||||||| | || ||| ||||||| |
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| T |
38308902 |
actatcaacaccaccaaccttttcaatgcactccttaaatttttccctgtgactctttgatcgcctcacaaacatgatgctctttctaatcttatacacg |
38308803 |
T |
|
| Q |
213 |
gcaccactaactagttt |
229 |
Q |
| |
|
||||||||||||||||| |
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| T |
38308802 |
gcaccactaactagttt |
38308786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 13 - 236
Target Start/End: Complemental strand, 38321100 - 38320877
Alignment:
| Q |
13 |
agtgaaaactttcaaatacatgccgatatttaagagcactttcaagcatcacataagttgagttcagactcatagacatgtccagatgcaggcgaacaga |
112 |
Q |
| |
|
|||||| ||||||||| ||| || |||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||| |||||| || |
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| T |
38321100 |
agtgaagactttcaaacacacacctatatttaagagcactttcaagcatcaaataagttgagttcacagtcatagacatgtccagatgcaagcgaactga |
38321001 |
T |
|
| Q |
113 |
actatcaacaccaccaaccttttcaatgcactccttaaattttgtccttctattttttgaattcctcacaaacatgatgctgtctcgaattccatacacg |
212 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| ||||| | | ||||||| ||| | ||||| |||||| | || |||| |||| |
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|
| T |
38321000 |
actatcaacaccaccaaccttttcaacgcactccttaaatttttgccttcgactctttgaatccctaaaaaacaagatgctctgtctaattttcgacaca |
38320901 |
T |
|
| Q |
213 |
gcaccactaactagttttaacccc |
236 |
Q |
| |
|
||| ||||||||||||| |||||| |
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| T |
38320900 |
gcatcactaactagtttcaacccc |
38320877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 13 - 236
Target Start/End: Complemental strand, 38300355 - 38300132
Alignment:
| Q |
13 |
agtgaaaactttcaaatacatgccgatatttaagagcactttcaagcatcacataagttgagttcagactcatagacatgtccagatgcaggcgaacaga |
112 |
Q |
| |
|
|||||| ||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||| || ||| | |||||||||||| |||||| || |
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|
| T |
38300355 |
agtgaagactttcaaacacacgccgatatttaagagcactttcaagcattgaataagttgagttcactcttttaggcgtgtccagatgcaagcgaacgga |
38300256 |
T |
|
| Q |
113 |
actatcaacaccaccaaccttttcaatgcactccttaaattttgtccttctattttttgaattcctcacaaacatgatgctgtctcgaattccatacacg |
212 |
Q |
| |
|
|| ||||||||||||||||||| |||| ||||||||||||||| ||||| | | ||||||| |||||||||||||||||| |||| |||| | ||| | |
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|
| T |
38300255 |
acaatcaacaccaccaacctttgcaatacactccttaaatttttcccttccactctttgaatgcctcacaaacatgatgctatctctaattttacacagg |
38300156 |
T |
|
| Q |
213 |
gcaccactaactagttttaacccc |
236 |
Q |
| |
|
|| | ||||||||||| |||||| |
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| T |
38300155 |
acatccctaactagtttcaacccc |
38300132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 13 - 151
Target Start/End: Complemental strand, 38313596 - 38313458
Alignment:
| Q |
13 |
agtgaaaactttcaaatacatgccgatatttaagagcactttcaagcatcacataagttgagttcagactcatagacatgtccagatgcaggcgaacaga |
112 |
Q |
| |
|
|||||| ||||||||| || || |||||||||||||||||| |||||||| |||||||||||||| ||||||||||| || ||||||| |||||| || |
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|
| T |
38313596 |
agtgaagactttcaaacgcacgctgatatttaagagcactttgaagcatcaaataagttgagttcactctcatagacatatctagatgcaagcgaaccga |
38313497 |
T |
|
| Q |
113 |
actatcaacaccaccaaccttttcaatgcactccttaaa |
151 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
38313496 |
actatcaacaccaccaaccttttcaacgcactccttaaa |
38313458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 13 - 190
Target Start/End: Original strand, 38850340 - 38850517
Alignment:
| Q |
13 |
agtgaaaactttcaaatacatgccgatatttaagagcactttcaagcatcacataagttgagttcagactcatagacatgtccagatgcaggcgaacaga |
112 |
Q |
| |
|
|||||||||||||||| || ||| ||||||||||| |||||||||| || ||||||||| ||| ||||||||| || |||| ||| | | |||| || |
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|
| T |
38850340 |
agtgaaaactttcaaacgcacaccggtatttaagagctctttcaagcaacatataagttgaactcaaactcatagatatatccaaatgtaagtgaaccga |
38850439 |
T |
|
| Q |
113 |
actatcaacaccaccaaccttttcaatgcactccttaaattttgtccttctattttttgaattcctcacaaacatgat |
190 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| ||| ||| | ||||||| ||||||||||||||| |
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|
| T |
38850440 |
actatcaacaccaccaaccttttcaaagcactccttaaatttttccctcctactctttgaatgcctcacaaacatgat |
38850517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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