View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21204_low_2 (Length: 618)
Name: NF21204_low_2
Description: NF21204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21204_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 526; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 15 - 603
Target Start/End: Complemental strand, 4776302 - 4775713
Alignment:
| Q |
15 |
aacctgtgtctactcccatggccacctcattctgctcacaacctaaacccgactccacatactgtgacagtaaggaatttcgcagtatacttggtgcctt |
114 |
Q |
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| T |
4776302 |
aacctgtgtctactcccatggccacctcattctgctcacaacctaaacccgactccacatactgtgacagtaaggaatttcgcagtatgcttggtgcctt |
4776203 |
T |
|
| Q |
115 |
acactacctttcaatcactcgcccagacatagcatttccagtgaataaactagcataacaaatgcaagctcctactgtgacagatatgcaagccttgaag |
214 |
Q |
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| T |
4776202 |
acactacctttcaatcactcgcccagacattgcatttccagtgaataaactagcataacaaatgcaagctcctactgtgacagatatgcaagccttgaag |
4776103 |
T |
|
| Q |
215 |
agagtattgcgctatctcaaatccaccatctccaatggactccatctcacaagatcttcaaatacaagcctcacaagcttttgtgatgcagattgggcag |
314 |
Q |
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| T |
4776102 |
agagtattgcgctatctcaaatccaccatctccaatggactccatctcacaagatcttcaaatacaaacctcacaagcttttgtgatgcagattaggcag |
4776003 |
T |
|
| Q |
315 |
gagacacaattgacagga----aacaggtgcttatttaatttatattggccctaatattatctcttggtcatgcaagaagcaaccaacaattgcaaaatc |
410 |
Q |
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|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4776002 |
gagacacaattgacaggaaatcaacaggtgcttatttaatttattttggccctaatattatctcttggtcatgcaagaagcaaccaacaattgcaaaatc |
4775903 |
T |
|
| Q |
411 |
gtcaactgaagctgaatatcgtactatagcagccactactcaagaattaatatgggttcaaaacttgttacaagaacttcaaattccattaacggcacca |
510 |
Q |
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| T |
4775902 |
gtcaactgaagctgaatatcgtactatagcagccactactcaagaattaatatgggttcaaaacttgttacaagaacttcaaattccattaactgcacca |
4775803 |
T |
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| Q |
511 |
acaatattcttagaaaacattggagctacatctctatgtgcaaaccctgtctttcagtactctaggatgaagcatattgccatagattatcat |
603 |
Q |
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| T |
4775802 |
acaatattctaagacaacattggagctacatatctatgtgcaaaccctgtctttc---actctaggatgaagcatattgccatagattatcat |
4775713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 278 - 603
Target Start/End: Complemental strand, 43061400 - 43061074
Alignment:
| Q |
278 |
acaagcctcacaagcttttgtgatgcagattgggcaggagacacaattgacagga----aacaggtgcttatttaatttatattggccctaatattatct |
373 |
Q |
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| T |
43061400 |
acaagcctcacaaacttttgtgatgcagattgggcaggagacacaattgacaggatatgaacaggtgcttatttcatttattttggccctaatattatct |
43061301 |
T |
|
| Q |
374 |
cttggtcatgcaagaagcaaccaacaattgcaaaatcgtcaactgaagctgaatatcgtactatagcagccactactcaagaattaatatgggttcaaaa |
473 |
Q |
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| T |
43061300 |
cttggtcatgcaagaagcagccaacagttgcaaaatcatcaactgaagctgaatatcggactatagcagccactactcaggaattaatatgggttcaaaa |
43061201 |
T |
|
| Q |
474 |
cttgttacaagaacttcaaattccattaacggcaccaacaatattcttagaaaacattggagctacatctctatgtgcaaaccctgtctttcagtactct |
573 |
Q |
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|||||||||||||||||||||||||||||| |||||||| ||||||| ||| |||||| ||||||||| |||||||||||||||||| |||| ||| | |
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| T |
43061200 |
cttgttacaagaacttcaaattccattaactgcaccaacgatattctcagacaacattagagctacatatctatgtgcaaaccctgtttttc---actat |
43061104 |
T |
|
| Q |
574 |
aggatgaagcatattgccatagattatcat |
603 |
Q |
| |
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|||||||| || |||||||||||||||||| |
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| T |
43061103 |
aggatgaaacacattgccatagattatcat |
43061074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 526 - 566
Target Start/End: Original strand, 45192874 - 45192914
Alignment:
| Q |
526 |
aacattggagctacatctctatgtgcaaaccctgtctttca |
566 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||| |||| |
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| T |
45192874 |
aacattggagctacatatctatgtgcaaaccctgtccttca |
45192914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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