View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21204_low_4 (Length: 300)
Name: NF21204_low_4
Description: NF21204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21204_low_4 |
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| [»] scaffold0086 (1 HSPs) |
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| [»] scaffold0429 (1 HSPs) |
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Alignment Details
Target: scaffold0086 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: scaffold0086
Description:
Target: scaffold0086; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 29017 - 29295
Alignment:
| Q |
1 |
ggagttatggggtttgaattctgctactaacaagtccctctccccttaacatatcaactactaacattagcctgaaaaataatcatcaattatgctattg |
100 |
Q |
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| T |
29017 |
ggagttatggggtttgaattctgctactaacaagtccctctccccttaacatatcaactactaacatttgcctgaaaaataatcatcaattatgctattg |
29116 |
T |
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| Q |
101 |
attcagcagatgctccttttactnnnnnnngactcaaagatttagacattaagtagctgcagcatagatatagcagaccaaaatgacattatatttgcgc |
200 |
Q |
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| T |
29117 |
attcagcagatgctccttttactaaaaaaagattcaatgatttagacattaagtagctgcagcatagatatagcagatcaaaatgacattatatttgcgc |
29216 |
T |
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| Q |
201 |
ttaaattatattcaaaagacataatatttgaagaaagattgaatcctagataagtattactattctgaaaatgtagcat |
279 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29217 |
ttaaattatattcaaatgacataatatttgaagaaagattgaatcctagataagtattactattctgaaaatgtagcat |
29295 |
T |
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Target: scaffold0429 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: scaffold0429
Description:
Target: scaffold0429; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 17 - 114
Target Start/End: Complemental strand, 9927 - 9830
Alignment:
| Q |
17 |
aattctgctactaacaagtccctctccccttaacatatcaactactaacattagcctgaaaaataatcatcaattatgctattgattcagcagatgct |
114 |
Q |
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|||||||||||||||| |||||||||||| |||| ||||||||| ||||||| |||| |||||||||||||| ||||||||||||||| |||||||| |
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| T |
9927 |
aattctgctactaacaggtccctctccccctaacgtatcaactattaacatttgcctcaaaaataatcatcagttatgctattgattcttcagatgct |
9830 |
T |
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