View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21205_high_1 (Length: 1463)
Name: NF21205_high_1
Description: NF21205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21205_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 402; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 25 - 473
Target Start/End: Complemental strand, 34896662 - 34896221
Alignment:
| Q |
25 |
ggaataagttaagaaattgtctgattaggaattttgaattacgtagctgtaaaaatgcattgcgtagtacagtgccagttgtgcctgtggatgtggccat |
124 |
Q |
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| T |
34896662 |
ggaataagttaagaaattgtctgattaggaattttgaattacgtagctgtaaaaatgcattgcgtagtacagtgccagttgtgcctgtggatttggccat |
34896563 |
T |
|
| Q |
125 |
ttcaattcaatggtctgatctcatagctgtcaatgttgtccctactccaaggagtccagtctatgtgtggtctcactagtgggccccattacatgacccc |
224 |
Q |
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| T |
34896562 |
ttcaattcaatggtctcatctcatagctgtcaatgttgtccctactccaaggagtccagtctatgtgtggtctcactagtgggccccattacatgacccc |
34896463 |
T |
|
| Q |
225 |
aaaaaagcaacaaaaacaacattctcatgcttccactgcaagacacccctaggacacgacaaaacagttgctgttttaacaataatagtaatattattct |
324 |
Q |
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| T |
34896462 |
aaaaaagcaacaaaaacaacattctcatgcttccactgcaagacacccctag-----gacaaaacagttgctgttttaacaataatagtaatattattct |
34896368 |
T |
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| Q |
325 |
aatttctcatcaaacttaatttcatttctcaaatcacttggtaatgaattgtctatctctaaaaaataatcacattattgatctagaccttcctattttt |
424 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
34896367 |
aatttctcatcaaacttaatttcattcctcaaatcacttggtaatgaattgtctatctct--aaaataatcacattattgatctagaccttcctattttt |
34896270 |
T |
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| Q |
425 |
cagtctatatttgaaacatattgcaaagttgaaatactaatcatctagt |
473 |
Q |
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| T |
34896269 |
tagtctatatttgaaacatattgcaaagttgaaatactaatcatctagt |
34896221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 1055 - 1445
Target Start/End: Complemental strand, 34895619 - 34895224
Alignment:
| Q |
1055 |
ttcatgttagtagttttggaataatttaaaatgtacatatgatatgtgtcaatcaaatattagacatcatatatataatnnnnnnnnnnnnnnn-----g |
1149 |
Q |
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| T |
34895619 |
ttcatgttagtagttttggaataatttaaaatgtacatatgatatgtgtcaatcaaatattagacagcatatatataataaaaaaataaaataaaaaaag |
34895520 |
T |
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| Q |
1150 |
caaagagtgtagaagaaagaaacttgctcccaaagcacactatccttttctttccttcccttcttcttctctataacctcttcaacagttttaaatttct |
1249 |
Q |
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| T |
34895519 |
caaagagtgtagaagaaagaaacttgctcccaaagcacactatccttttctttccttcccttcttcttctctataacctcttcaacagttttaaatttct |
34895420 |
T |
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| Q |
1250 |
acatacaaaaacaaaagcaaagcatcctctcttcacattctctttcttttccttgcaagtttcaatctactattgtaactgtcggtgtannnnnnnngtt |
1349 |
Q |
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| T |
34895419 |
acatacaaaaacaaaagcaaagcatcttctcttcacattctctttcttttccttgcaagtttcaatctactattgtaactgtcggtgtattttttttgtt |
34895320 |
T |
|
| Q |
1350 |
aaaaaattcatctaagtttcgtatctttttagttttaatcnnnnnnncatttaatgtagtcagtatgtgtcaagagttcatactttttggtctcct |
1445 |
Q |
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| T |
34895319 |
caaaaattcatctaagtttcgtatctttttagttttaatcaaaaaaacatttaatgtagtcaatatgtgtcaagagttcatactttttggtctcct |
34895224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 678 - 992
Target Start/End: Complemental strand, 34895989 - 34895682
Alignment:
| Q |
678 |
attagcaacaaaaactcataccaaaacccaaagccaatttaaaacaatatcatttgttgaaaattataagtggtttgatcaaaatcaaatagctcacatt |
777 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
34895989 |
attagcaacaaaaactcataccaaaacccaaagccaatttaaaacaatatcatttgttgaaaattataagtcgtttgatcaaaatcaaatagctcacatt |
34895890 |
T |
|
| Q |
778 |
tttaacgacgtgatttgagtcggtatataacattaaattacaaaccgtacgatttagattggacagtccaaaatatgcaaatgcaactcatgtnnnnnnn |
877 |
Q |
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| T |
34895889 |
tttaacgacgtgatttgagt-agtatataacattaaattacaaaccatacgatttagattgaacggtccaaaatatgcaaatgcaactcatgtaaaaaaa |
34895791 |
T |
|
| Q |
878 |
cataattgcaaccaaaacaaacaagtaacatcttgatcttcactatacaaacattcaaatgcaaataaacccaaaataatactatgccctgtccttttca |
977 |
Q |
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| T |
34895790 |
cataattgcaaccaaaacaaacaagcaac------atctccactatacaaacattcaaatgcaaataaacccaaaataatactatgccctgtccttttca |
34895697 |
T |
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| Q |
978 |
ttctgagtctctctc |
992 |
Q |
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| T |
34895696 |
ttctgagtctctctc |
34895682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 88; E-Value: 1e-41
Query Start/End: Original strand, 490 - 616
Target Start/End: Complemental strand, 34896177 - 34896051
Alignment:
| Q |
490 |
taaaatcaaccatcatgttccaaatcattgttcactcctacacatcaannnnnnnnnnnnngagtactcctacatatcaatgttttctacactttaatgt |
589 |
Q |
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| T |
34896177 |
taaaatcaaccatcatgttccaaatcattgttcactcctacacatcaattttttcttttttgagtactcctacatatcaatgttttctacactttaatgt |
34896078 |
T |
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| Q |
590 |
acccatatattaacctcaaaggaggta |
616 |
Q |
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| T |
34896077 |
acccatatattaacctcaaaggaggta |
34896051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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