View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21205_high_15 (Length: 447)

Name: NF21205_high_15
Description: NF21205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21205_high_15
NF21205_high_15
[»] chr8 (10 HSPs)
chr8 (219-447)||(30936666-30936899)
chr8 (336-445)||(1786604-1786713)
chr8 (219-307)||(533695-533782)
chr8 (219-287)||(3877575-3877642)
chr8 (371-447)||(30089047-30089123)
chr8 (371-445)||(13800784-13800858)
chr8 (219-289)||(30089192-30089264)
chr8 (219-281)||(13800646-13800707)
chr8 (336-398)||(3877687-3877749)
chr8 (221-287)||(1786494-1786559)
[»] chr7 (11 HSPs)
chr7 (219-447)||(29263251-29263484)
chr7 (339-447)||(34095706-34095814)
chr7 (331-445)||(47329521-47329635)
chr7 (339-447)||(6444017-6444124)
chr7 (219-307)||(29245263-29245350)
chr7 (370-447)||(19465301-19465378)
chr7 (219-307)||(45974434-45974521)
chr7 (219-289)||(6444170-6444239)
chr7 (370-447)||(29830404-29830481)
chr7 (219-287)||(34095862-34095929)
chr7 (222-286)||(47329676-47329739)
[»] chr3 (19 HSPs)
chr3 (331-445)||(20107922-20108036)
chr3 (331-436)||(29702502-29702607)
chr3 (331-445)||(5234582-5234696)
chr3 (336-442)||(55406241-55406346)
chr3 (371-447)||(12945336-12945412)
chr3 (371-447)||(33213559-33213635)
chr3 (219-286)||(29702395-29702461)
chr3 (219-289)||(12945482-12945551)
chr3 (219-281)||(29835795-29835856)
chr3 (219-438)||(31654622-31654839)
chr3 (219-307)||(39831207-39831294)
chr3 (219-286)||(20108077-20108143)
chr3 (223-287)||(55406391-55406453)
chr3 (371-447)||(29835645-29835719)
chr3 (370-447)||(50359643-50359720)
chr3 (370-447)||(50646789-50646866)
chr3 (222-286)||(5234737-5234800)
chr3 (219-283)||(33213421-33213484)
chr3 (406-444)||(22426931-22426969)
[»] scaffold0662 (2 HSPs)
scaffold0662 (339-447)||(7100-7208)
scaffold0662 (219-280)||(6985-7045)
[»] chr4 (18 HSPs)
chr4 (339-447)||(42063124-42063232)
chr4 (339-447)||(47028221-47028329)
chr4 (353-447)||(45988251-45988345)
chr4 (370-447)||(27296147-27296224)
chr4 (331-436)||(15530173-15530282)
chr4 (219-289)||(24226876-24226945)
chr4 (371-445)||(24227014-24227088)
chr4 (219-307)||(20135422-20135509)
chr4 (219-289)||(15530066-15530135)
chr4 (370-447)||(4922368-4922445)
chr4 (219-311)||(42980232-42980324)
chr4 (371-447)||(28682928-28683004)
chr4 (219-307)||(55917407-55917494)
chr4 (222-289)||(45988125-45988191)
chr4 (219-280)||(42063009-42063069)
chr4 (219-280)||(47028106-47028166)
chr4 (219-307)||(28683066-28683152)
chr4 (381-438)||(42980107-42980164)
[»] chr5 (16 HSPs)
chr5 (331-436)||(39885701-39885806)
chr5 (371-447)||(1835877-1835953)
chr5 (371-447)||(40321357-40321433)
chr5 (219-289)||(39885844-39885913)
chr5 (219-307)||(24782715-24782802)
chr5 (219-289)||(6767931-6768000)
chr5 (219-281)||(31480466-31480527)
chr5 (219-289)||(40321502-40321571)
chr5 (219-289)||(41405998-41406067)
chr5 (371-445)||(41406136-41406210)
chr5 (219-272)||(32720162-32720215)
chr5 (371-447)||(31480604-31480680)
chr5 (219-289)||(1836022-1836091)
chr5 (370-447)||(30628545-30628622)
chr5 (219-310)||(20174030-20174120)
chr5 (371-402)||(6768069-6768100)
[»] chr1 (15 HSPs)
chr1 (339-447)||(45319728-45319836)
chr1 (371-447)||(39242485-39242561)
chr1 (219-307)||(22105398-22105485)
chr1 (219-289)||(49410530-49410599)
chr1 (366-447)||(52382775-52382856)
chr1 (370-447)||(27289742-27289819)
chr1 (219-307)||(45346270-45346357)
chr1 (371-447)||(49410385-49410461)
chr1 (219-307)||(12983531-12983618)
chr1 (371-447)||(47036128-47036204)
chr1 (379-447)||(17015903-17015969)
chr1 (371-447)||(22105547-22105623)
chr1 (219-287)||(45319613-45319680)
chr1 (261-307)||(39242623-39242669)
chr1 (219-281)||(47036281-47036342)
[»] chr6 (13 HSPs)
chr6 (339-447)||(7124455-7124561)
chr6 (354-445)||(4181099-4181190)
chr6 (57-110)||(33696968-33697021)
chr6 (371-447)||(944960-945036)
chr6 (219-289)||(7124340-7124409)
chr6 (370-447)||(12945513-12945590)
chr6 (57-102)||(33676264-33676309)
chr6 (57-94)||(33688658-33688695)
chr6 (222-281)||(4181259-4181317)
chr6 (222-310)||(12477879-12477966)
chr6 (259-310)||(26855333-26855384)
chr6 (219-281)||(945113-945174)
chr6 (58-95)||(33667683-33667720)
[»] chr2 (14 HSPs)
chr2 (219-289)||(33751512-33751581)
chr2 (219-287)||(7091120-7091187)
chr2 (331-445)||(37080582-37080696)
chr2 (219-307)||(16431862-16431949)
chr2 (219-307)||(17692605-17692692)
chr2 (219-307)||(37259677-37259764)
chr2 (219-307)||(14805580-14805667)
chr2 (219-286)||(37080737-37080803)
chr2 (370-447)||(14101830-14101907)
chr2 (227-307)||(15332744-15332823)
chr2 (336-398)||(7091013-7091075)
chr2 (219-289)||(30778298-30778367)
chr2 (336-398)||(33751624-33751686)
chr2 (337-426)||(30778411-30778500)
[»] scaffold0896 (2 HSPs)
scaffold0896 (339-447)||(1802-1909)
scaffold0896 (219-289)||(1955-2024)
[»] scaffold0685 (1 HSPs)
scaffold0685 (366-447)||(6788-6869)
[»] scaffold0166 (1 HSPs)
scaffold0166 (219-307)||(25098-25185)
[»] scaffold0016 (1 HSPs)
scaffold0016 (72-118)||(83625-83671)
[»] scaffold0285 (1 HSPs)
scaffold0285 (338-425)||(17653-17737)


Alignment Details
Target: chr8 (Bit Score: 142; Significance: 2e-74; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 219 - 447
Target Start/End: Original strand, 30936666 - 30936899
Alignment:
Q  219 ttctatggtgaagttattcaattgactttttcggtgaagttaaccctacatccaataataatgtgccacatttttaaatgatgtcatgtca-----tggt 313  Q
    |||||||||||||||||| |||||||||||||||| || |||| ||||||||||||||||||||||||| |||||||||||||||||||||     ||||    
T  30936666 ttctatggtgaagttatttaattgactttttcggtaaaattaatcctacatccaataataatgtgccacgtttttaaatgatgtcatgtcagctgatggt 30936765  T
Q  314 tatcgtgtatctctacaatctcctcaatatgttccaccatagactaattttattaaattttttgaaccatcagattaaacacctcactatttttattgtg 413  Q
    ||  ||||||||||| ||| | ||||||||||||||||||| |||| |||||||| |||||||||||||||| ||||| ||||||||| || ||||||||    
T  30936766 tactgtgtatctctataatttgctcaatatgttccaccataaactagttttattagattttttgaaccatcaaattaagcacctcactgttgttattgtg 30936865  T
Q  414 ttgcctttcacactctatttatttcctttctcct 447  Q
    |||||||||||||| |||||||||||||||||||    
T  30936866 ttgcctttcacactgtatttatttcctttctcct 30936899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 336 - 445
Target Start/End: Original strand, 1786604 - 1786713
Alignment:
Q  336 ctcaatatgttccaccatagactaattttattaaattttttgaaccatcagattaaacacctcactatttttattgtgttgcctttcacactctatttat 435  Q
    |||||||||||||||| || |||| |||||||| ||||||||||| ||| |||||| |||||||||| | |||||||||||  ||||||||| |||||||    
T  1786604 ctcaatatgttccaccgtaaactagttttattagattttttgaactatcggattaagcacctcactagtgttattgtgttgattttcacactatatttat 1786703  T
Q  436 ttcctttctc 445  Q
    ||||||||||    
T  1786704 ttcctttctc 1786713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 219 - 307
Target Start/End: Complemental strand, 533782 - 533695
Alignment:
Q  219 ttctatggtgaagttattcaattgactttttcggtgaagttaaccctacatccaataataatgtgccacatttttaaatgatgtcatgt 307  Q
    |||||||||||||| ||| ||||||||||||| | ||||||| || ||||||||||||||||| |||||||| || |||||||||||||    
T  533782 ttctatggtgaagtcattaaattgactttttcagagaagttatcc-tacatccaataataatgcgccacattgttgaatgatgtcatgt 533695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 219 - 287
Target Start/End: Original strand, 3877575 - 3877642
Alignment:
Q  219 ttctatggtgaagttattcaattgactttttcggtgaagttaaccctacatccaataataatgtgccac 287  Q
    ||||||||||||||  ||||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  3877575 ttctatggtgaagtcgttcaattgattttttcggtgaagtt-accctacatccaataataatgtgccac 3877642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 371 - 447
Target Start/End: Complemental strand, 30089123 - 30089047
Alignment:
Q  371 ttttttgaaccatcagattaaacacctcactatttttattgtgttgcctttcacactctatttatttcctttctcct 447  Q
    ||||||||||||||||||||||||| |||||| | ||||| ||||| |||||||||| |||||||| ||||||||||    
T  30089123 ttttttgaaccatcagattaaacacttcactagtgttattttgttgtctttcacactatatttattccctttctcct 30089047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 371 - 445
Target Start/End: Original strand, 13800784 - 13800858
Alignment:
Q  371 ttttttgaaccatcagattaaacacctcactatttttattgtgttgcctttcacactctatttatttcctttctc 445  Q
    |||||||||||||||||||||||||||||||| | |||||||||||  |||| |||| |||||||| ||||||||    
T  13800784 ttttttgaaccatcagattaaacacctcactaatgttattgtgttgtttttcgcactatatttattccctttctc 13800858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 219 - 289
Target Start/End: Complemental strand, 30089264 - 30089192
Alignment:
Q  219 ttctatggtgaagttattcaattgactttttcggtgaagttaac--cctacatccaataataatgtgccacat 289  Q
    ||||||||||||||  |||||||||||||||| ||||||||| |  |||||||||||||||||||||||||||    
T  30089264 ttctatggtgaagtctttcaattgactttttcagtgaagttatcctcctacatccaataataatgtgccacat 30089192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 219 - 281
Target Start/End: Original strand, 13800646 - 13800707
Alignment:
Q  219 ttctatggtgaagttattcaattgactttttcggtgaagttaaccctacatccaataataatg 281  Q
    |||||||||||||| ||||||||||||||||| |||||||| || ||||||||||||||||||    
T  13800646 ttctatggtgaagtcattcaattgactttttcagtgaagtt-actctacatccaataataatg 13800707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 336 - 398
Target Start/End: Original strand, 3877687 - 3877749
Alignment:
Q  336 ctcaatatgttccaccatagactaattttattaaattttttgaaccatcagattaaacacctc 398  Q
    |||||||| ||||||| |||||||| ||||||| |||||||||||||||| ||||| ||||||    
T  3877687 ctcaatatattccaccgtagactaactttattagattttttgaaccatcaaattaatcacctc 3877749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 221 - 287
Target Start/End: Original strand, 1786494 - 1786559
Alignment:
Q  221 ctatggtgaagttattcaattgactttttcggtgaagttaaccctacatccaataataatgtgccac 287  Q
    ||||||||||||| |||||||||||||||  |||||||| ||| |||||| |||||||||| |||||    
T  1786494 ctatggtgaagttgttcaattgactttttttgtgaagtt-accatacatctaataataatgcgccac 1786559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 142; Significance: 2e-74; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 219 - 447
Target Start/End: Complemental strand, 29263484 - 29263251
Alignment:
Q  219 ttctatggtgaagttattcaattgactttttcggtgaagttaaccctacatccaataataatgtgccacatttttaaatgatgtcatgtca-----tggt 313  Q
    |||||||||||||||||| |||||| ||||||||| || |||| ||||||||||||||||||||||||| |||||||||||||||||||||     ||||    
T  29263484 ttctatggtgaagttatttaattgattttttcggtaaaattaatcctacatccaataataatgtgccacgtttttaaatgatgtcatgtcagctgatggt 29263385  T
Q  314 tatcgtgtatctctacaatctcctcaatatgttccaccatagactaattttattaaattttttgaaccatcagattaaacacctcactatttttattgtg 413  Q
    || |||| ||||||| ||| | |||||||||||||||||||||||| |||||||| |||||||||||||||| ||||| ||||||||| || ||||||||    
T  29263384 taccgtgcatctctataatttgctcaatatgttccaccatagactagttttattagattttttgaaccatcaaattaagcacctcactgttgttattgtg 29263285  T
Q  414 ttgcctttcacactctatttatttcctttctcct 447  Q
    |||||||||||||| |||||||||||||||||||    
T  29263284 ttgcctttcacactgtatttatttcctttctcct 29263251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 339 - 447
Target Start/End: Complemental strand, 34095814 - 34095706
Alignment:
Q  339 aatatgttccaccatagactaattttattaaattttttgaaccatcagattaaacacctcactatttttattgtgttgcctttcacactctatttatttc 438  Q
    ||||||||||||| |||||||  ||||||| |||||||||||||||||||||| || ||||||| | |||||||||||||||||||||| ||||||||||    
T  34095814 aatatgttccaccgtagactagctttattagattttttgaaccatcagattaagcatctcactagtgttattgtgttgcctttcacactatatttatttc 34095715  T
Q  439 ctttctcct 447  Q
     ||||||||    
T  34095714 ttttctcct 34095706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 331 - 445
Target Start/End: Complemental strand, 47329635 - 47329521
Alignment:
Q  331 atctcctcaatatgttccaccatagactaattttattaaattttttgaaccatcagattaaacacctcactatttttattgtgttgcctttcacactcta 430  Q
    |||| |||||||| ||| |||  |||||| |||||||| ||||||||||||||| ||||||  ||||||||| | |||||||||||||||||||||| ||    
T  47329635 atctgctcaatatattctaccgaagactagttttattagattttttgaaccatcggattaagtacctcactagtcttattgtgttgcctttcacactata 47329536  T
Q  431 tttatttcctttctc 445  Q
    |||| || |||||||    
T  47329535 tttaatttctttctc 47329521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 339 - 447
Target Start/End: Complemental strand, 6444124 - 6444017
Alignment:
Q  339 aatatgttccaccatagactaattttattaaattttttgaaccatcagattaaacacctcactatttttattgtgttgcctttcacactctatttatttc 438  Q
    |||||||| || | || ||||| ||||||||||||||| |||||||| ||||| |||||||||| | ||||||||||| |||||||||| ||||||||||    
T  6444124 aatatgtttcatcgtaaactaactttattaaatttttt-aaccatcaaattaagcacctcactagtgttattgtgttgtctttcacactatatttatttc 6444026  T
Q  439 ctttctcct 447  Q
     ||||||||    
T  6444025 ttttctcct 6444017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 219 - 307
Target Start/End: Complemental strand, 29245350 - 29245263
Alignment:
Q  219 ttctatggtgaagttattcaattgactttttcggtgaagttaaccctacatccaataataatgtgccacatttttaaatgatgtcatgt 307  Q
    |||||||||||||||||| ||||||||||||| | ||||||| || ||||||||||||||||| |||||||| || |||||||||||||    
T  29245350 ttctatggtgaagttattaaattgactttttcagagaagttatcc-tacatccaataataatgcgccacattgttgaatgatgtcatgt 29245263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 370 - 447
Target Start/End: Complemental strand, 19465378 - 19465301
Alignment:
Q  370 attttttgaaccatcagattaaacacctcactatttttattgtgttgcctttcacactctatttatttcctttctcct 447  Q
    |||||||||| |||| |||||||||| |||||| | |||||||||||||||||||||| |||||||||| ||||||||    
T  19465378 attttttgaatcatcggattaaacacttcactagtgttattgtgttgcctttcacactatatttatttcttttctcct 19465301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 219 - 307
Target Start/End: Complemental strand, 45974521 - 45974434
Alignment:
Q  219 ttctatggtgaagttattcaattgactttttcggtgaagttaaccctacatccaataataatgtgccacatttttaaatgatgtcatgt 307  Q
    |||||||||||||| ||| ||||||||||||| | ||||||| || ||||||||||||||||| |||||||| || |||||||||||||    
T  45974521 ttctatggtgaagtcattaaattgactttttcagagaagttatcc-tacatccaataataatgcgccacattgttgaatgatgtcatgt 45974434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 219 - 289
Target Start/End: Complemental strand, 6444239 - 6444170
Alignment:
Q  219 ttctatggtgaagttattcaattgactttttcggtgaagttaaccctacatccaataataatgtgccacat 289  Q
    |||||||||||||| |||||||||||||||||||||||||| | ||||||| ||||||||||| |||||||    
T  6444239 ttctatggtgaagtcattcaattgactttttcggtgaagtt-atcctacattcaataataatgcgccacat 6444170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 370 - 447
Target Start/End: Original strand, 29830404 - 29830481
Alignment:
Q  370 attttttgaaccatcagattaaacacctcactatttttattgtgttgcctttcacactctatttatttcctttctcct 447  Q
    |||||||||| ||||||||||||||| ||| |  | ||||||||||| |||||||||| |||||||||| ||||||||    
T  29830404 attttttgaatcatcagattaaacacttcattggtgttattgtgttgtctttcacactatatttatttcttttctcct 29830481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 219 - 287
Target Start/End: Complemental strand, 34095929 - 34095862
Alignment:
Q  219 ttctatggtgaagttattcaattgactttttcggtgaagttaaccctacatccaataataatgtgccac 287  Q
    |||||||||||||| |||||||||||||||| ||||||||| | ||||||| ||||||||||| |||||    
T  34095929 ttctatggtgaagtcattcaattgacttttttggtgaagtt-atcctacattcaataataatgcgccac 34095862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 222 - 286
Target Start/End: Complemental strand, 47329739 - 47329676
Alignment:
Q  222 tatggtgaagttattcaattgactttttcggtgaagttaaccctacatccaataataatgtgcca 286  Q
    |||||||||||||||||||||||||||| | ||||||| | ||||||||||||||||||| ||||    
T  47329739 tatggtgaagttattcaattgacttttttgatgaagtt-atcctacatccaataataatgcgcca 47329676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 331 - 445
Target Start/End: Complemental strand, 20108036 - 20107922
Alignment:
Q  331 atctcctcaatatgttccaccatagactaattttattaaattttttgaaccatcagattaaacacctcactatttttattgtgttgcctttcacactcta 430  Q
    |||| |||||||||||| ||| ||||||| |||||||| ||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||| ||    
T  20108036 atctgctcaatatgttctaccgtagactagttttattagattttttgaaccatcggattaaacacctcactagtcttattgtgttgcctttcacactata 20107937  T
Q  431 tttatttcctttctc 445  Q
    |||| ||||||||||    
T  20107936 tttaattcctttctc 20107922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 331 - 436
Target Start/End: Original strand, 29702502 - 29702607
Alignment:
Q  331 atctcctcaatatgttccaccatagactaattttattaaattttttgaaccatcagattaaacacctcactatttttattgtgttgcctttcacactcta 430  Q
    |||| ||| |||||||||||| ||||||| |||||||| ||||||||||| ||||||||||||||||||||| | |||||||||||  ||||||||| ||    
T  29702502 atctgctcgatatgttccaccgtagactagttttattagattttttgaactatcagattaaacacctcactagtattattgtgttgattttcacactata 29702601  T
Q  431 tttatt 436  Q
    ||||||    
T  29702602 tttatt 29702607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 331 - 445
Target Start/End: Complemental strand, 5234696 - 5234582
Alignment:
Q  331 atctcctcaatatgttccaccatagactaattttattaaattttttgaaccatcagattaaacacctcactatttttattgtgttgcctttcacactcta 430  Q
    |||| |||||||| ||| |||  |||||| |||||||| ||||||||||||||| ||||||  ||||||||| | |||||||||||||||||||||| ||    
T  5234696 atctgctcaatatattctaccgaagactagttttattagattttttgaaccatcggattaagtacctcactagtcttattgtgttgcctttcacactata 5234597  T
Q  431 tttatttcctttctc 445  Q
    |||| || |||||||    
T  5234596 tttaatttctttctc 5234582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 336 - 442
Target Start/End: Complemental strand, 55406346 - 55406241
Alignment:
Q  336 ctcaatatgttccaccatagactaattttattaaattttttgaaccatcagattaaacacctcactatttttattgtgttgcctttcacactctatttat 435  Q
    |||||||||||| ||| |||||||||||||||| ||||||||||| ||||||||||    ||||||| | ||||||||||| |||||||||| |||||||    
T  55406346 ctcaatatgttc-accgtagactaattttattagattttttgaacaatcagattaagtgtctcactagtgttattgtgttgtctttcacactgtatttat 55406248  T
Q  436 ttccttt 442  Q
    |||||||    
T  55406247 ttccttt 55406241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 371 - 447
Target Start/End: Complemental strand, 12945412 - 12945336
Alignment:
Q  371 ttttttgaaccatcagattaaacacctcactatttttattgtgttgcctttcacactctatttatttcctttctcct 447  Q
    ||||||||||||||||||||| ||| |||||| | |||| ||||||||||||||||| |||||||| ||||||||||    
T  12945412 ttttttgaaccatcagattaagcacatcactaatgttatcgtgttgcctttcacactatatttattccctttctcct 12945336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 371 - 447
Target Start/End: Original strand, 33213559 - 33213635
Alignment:
Q  371 ttttttgaaccatcagattaaacacctcactatttttattgtgttgcctttcacactctatttatttcctttctcct 447  Q
    ||||||||||||||||||||||||| |||||| | |||||||||||  ||||||||| |||||||| ||||||||||    
T  33213559 ttttttgaaccatcagattaaacacatcactagtgttattgtgttgtttttcacactatatttattccctttctcct 33213635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 219 - 286
Target Start/End: Original strand, 29702395 - 29702461
Alignment:
Q  219 ttctatggtgaagttattcaattgactttttcggtgaagttaaccctacatccaataataatgtgcca 286  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||| || ||||||||||||||||    
T  29702395 ttctatggtgaagttgttcaattgactttttcggtgaagtt-accctaaattcaataataatgtgcca 29702461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 219 - 289
Target Start/End: Complemental strand, 12945551 - 12945482
Alignment:
Q  219 ttctatggtgaagttattcaattgactttttcggtgaagttaaccctacatccaataataatgtgccacat 289  Q
    ||||||||||||||| ||||||||||||||||| ||||||| | ||||||||||||||||||| |||||||    
T  12945551 ttctatggtgaagttgttcaattgactttttcgatgaagtt-atcctacatccaataataatgcgccacat 12945482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 219 - 281
Target Start/End: Complemental strand, 29835856 - 29835795
Alignment:
Q  219 ttctatggtgaagttattcaattgactttttcggtgaagttaaccctacatccaataataatg 281  Q
    |||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||    
T  29835856 ttctatggtgaagtcattcaattgactttttcagtgaagtt-accctacatccaataataatg 29835795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 219 - 438
Target Start/End: Original strand, 31654622 - 31654839
Alignment:
Q  219 ttctatggtgaagttattcaattgactttttcggtgaagttaaccctac-atccaataataatgtgccacatttttaaatgatgtcatgtcatggttatc 317  Q
    ||||| |||||||| |||||||| ||||||||||||||||| | ||||| |||||||||||||||||||  | ||||||||||| ||| ||||| | ||     
T  31654622 ttctacggtgaagtcattcaattaactttttcggtgaagtt-atcctacgatccaataataatgtgccaagtatttaaatgatgccatatcatgttgatg 31654720  T
Q  318 gtgtatctctacaatctcctcaatatgttccaccatagactaattttatt----aaattttttgaaccatcagattaaacacctcactatttttattgtg 413  Q
    |      | |||||| |  |||||||||||||||||||||||  ||||||    |||     | |||||||||||||| |||||||||| | ||||| ||    
T  31654721 g------tatacaatttgttcaatatgttccaccatagactagctttattaaaaaaaaaaaattaaccatcagattaagcacctcactagtgttattatg 31654814  T
Q  414 ttgcctttcacactctatttatttc 438  Q
    ||||| |||||| | ||||||||||    
T  31654815 ttgcccttcacattatatttatttc 31654839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 219 - 307
Target Start/End: Original strand, 39831207 - 39831294
Alignment:
Q  219 ttctatggtgaagttattcaattgactttttcggtgaagttaaccctacatccaataataatgtgccacatttttaaatgatgtcatgt 307  Q
    |||||||||||||| ||| ||||||||||||| | | ||||| || ||||||||||||||||| |||||||| || |||||||||||||    
T  39831207 ttctatggtgaagtcattaaattgactttttcagagcagttatcc-tacatccaataataatgcgccacattgttgaatgatgtcatgt 39831294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 219 - 286
Target Start/End: Complemental strand, 20108143 - 20108077
Alignment:
Q  219 ttctatggtgaagttattcaattgactttttcggtgaagttaaccctacatccaataataatgtgcca 286  Q
    ||||||||||||||||||||||||||||||| ||||||||| | | ||||||||||||||||| ||||    
T  20108143 ttctatggtgaagttattcaattgacttttttggtgaagtt-atcttacatccaataataatgcgcca 20108077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 223 - 287
Target Start/End: Complemental strand, 55406453 - 55406391
Alignment:
Q  223 atggtgaagttattcaattgactttttcggtgaagttaaccctacatccaataataatgtgccac 287  Q
    ||||| ||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  55406453 atggtaaagttgttcaattga-tttttcggtgaagtta-ccctacatccaataataatgtgccac 55406391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 371 - 447
Target Start/End: Complemental strand, 29835719 - 29835645
Alignment:
Q  371 ttttttgaaccatcagattaaacacctcactatttttattgtgttgcctttcacactctatttatttcctttctcct 447  Q
    |||||||||||||||||||||||||||||||| | ||||| |||||  |||||||  ||||||||| | ||||||||    
T  29835719 ttttttgaaccatcagattaaacacctcactagtgttattttgttgtttttcaca--ctatttattccgtttctcct 29835645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 370 - 447
Target Start/End: Original strand, 50359643 - 50359720
Alignment:
Q  370 attttttgaaccatcagattaaacacctcactatttttattgtgttgcctttcacactctatttatttcctttctcct 447  Q
    ||||||| || ||||  ||||||||| |||||| | ||||||||||||||||| |||| |||||||||| ||||||||    
T  50359643 atttttttaatcatcgaattaaacacttcactagtattattgtgttgcctttcccactatatttatttcttttctcct 50359720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 370 - 447
Target Start/End: Original strand, 50646789 - 50646866
Alignment:
Q  370 attttttgaaccatcagattaaacacctcactatttttattgtgttgcctttcacactctatttatttcctttctcct 447  Q
    |||||||||| ||||  ||||||||| |||||  | |||||||| ||||||||||||| |||||||||| ||||||||    
T  50646789 attttttgaatcatcgaattaaacacttcactggtgttattgtggtgcctttcacactatatttatttcttttctcct 50646866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 222 - 286
Target Start/End: Complemental strand, 5234800 - 5234737
Alignment:
Q  222 tatggtgaagttattcaattgactttttcggtgaagttaaccctacatccaataataatgtgcca 286  Q
    |||||||||||||||||||||||||||| | ||||||| | ||||||| ||||||||||| ||||    
T  5234800 tatggtgaagttattcaattgacttttttgatgaagtt-atcctacattcaataataatgcgcca 5234737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 219 - 283
Target Start/End: Original strand, 33213421 - 33213484
Alignment:
Q  219 ttctatggtgaagttattcaattgactttttcggtgaagttaaccctacatccaataataatgtg 283  Q
    ||||||||| |||| ||| |||||||||||||| ||||||| ||| |||||||||||||||||||    
T  33213421 ttctatggtaaagtcatttaattgactttttcgatgaagtt-accatacatccaataataatgtg 33213484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 406 - 444
Target Start/End: Original strand, 22426931 - 22426969
Alignment:
Q  406 ttattgtgttgcctttcacactctatttatttcctttct 444  Q
    |||||||||||||||||||||| |||||||||| |||||    
T  22426931 ttattgtgttgcctttcacactatatttatttcatttct 22426969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0662 (Bit Score: 69; Significance: 8e-31; HSPs: 2)
Name: scaffold0662
Description:

Target: scaffold0662; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 339 - 447
Target Start/End: Original strand, 7100 - 7208
Alignment:
Q  339 aatatgttccaccatagactaattttattaaattttttgaaccatcagattaaacacctcactatttttattgtgttgcctttcacactctatttatttc 438  Q
    ||||||||||||| |||||||  ||||||| |||||||||||||||||||||| |||||||||| | |||||||||||||||||||| | ||||||||||    
T  7100 aatatgttccaccgtagactagctttattatattttttgaaccatcagattaagcacctcactagtgttattgtgttgcctttcacattatatttatttc 7199  T
Q  439 ctttctcct 447  Q
     ||||||||    
T  7200 ttttctcct 7208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0662; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 219 - 280
Target Start/End: Original strand, 6985 - 7045
Alignment:
Q  219 ttctatggtgaagttattcaattgactttttcggtgaagttaaccctacatccaataataat 280  Q
    |||||||||||||| |||||||||||||||| ||||||||| | ||||||| ||||||||||    
T  6985 ttctatggtgaagtcattcaattgacttttttggtgaagtt-atcctacattcaataataat 7045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 8e-31; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 339 - 447
Target Start/End: Original strand, 42063124 - 42063232
Alignment:
Q  339 aatatgttccaccatagactaattttattaaattttttgaaccatcagattaaacacctcactatttttattgtgttgcctttcacactctatttatttc 438  Q
    ||||||||||||| |||||||  ||||||| |||||||||||||||||||||| || ||||||| | |||||||||||||||||||||| ||||||||||    
T  42063124 aatatgttccaccgtagactagctttattagattttttgaaccatcagattaagcatctcactagtgttattgtgttgcctttcacactatatttatttc 42063223  T
Q  439 ctttctcct 447  Q
     ||||||||    
T  42063224 ttttctcct 42063232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 339 - 447
Target Start/End: Original strand, 47028221 - 47028329
Alignment:
Q  339 aatatgttccaccatagactaattttattaaattttttgaaccatcagattaaacacctcactatttttattgtgttgcctttcacactctatttatttc 438  Q
    ||||||||||||| |||||||  ||||||| |||||||||||||||||||||| |||||||||| | |||||||||||||||||||| | ||||||||||    
T  47028221 aatatgttccaccgtagactagctttattatattttttgaaccatcagattaagcacctcactagtgttattgtgttgcctttcacattatatttatttc 47028320  T
Q  439 ctttctcct 447  Q
     ||||||||    
T  47028321 ttttctcct 47028329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 353 - 447
Target Start/End: Original strand, 45988251 - 45988345
Alignment:
Q  353 tagactaattttattaaattttttgaaccatcagattaaacacctcactatttttattgtgttgcctttcacactctatttatttcctttctcct 447  Q
    |||||||| ||||||| ||||||| |||||||| ||||| |||||||||| | ||||||||||| |||||||||| |||||||||| ||||||||    
T  45988251 tagactaactttattagattttttaaaccatcaaattaagcacctcactagtgttattgtgttgtctttcacactatatttatttcttttctcct 45988345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 370 - 447
Target Start/End: Complemental strand, 27296224 - 27296147
Alignment:
Q  370 attttttgaaccatcagattaaacacctcactatttttattgtgttgcctttcacactctatttatttcctttctcct 447  Q
    |||||||||| |||| |||||||||| |||||| | |||||||||||||||||||||| |||||||||| ||||||||    
T  27296224 attttttgaatcatcggattaaacacttcactagtgttattgtgttgcctttcacactatatttatttcttttctcct 27296147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 331 - 436
Target Start/End: Original strand, 15530173 - 15530282
Alignment:
Q  331 atctcctcaatatgttccaccatagactaattttattaaattttttgaaccatcag----attaaacacctcactatttttattgtgttgcctttcacac 426  Q
    |||| ||| |||||||||||| ||||||| |||||||| ||||||||||| |||||    |||||||||||||||| | |||||||||||  ||||||||    
T  15530173 atctgctcgatatgttccaccgtagactagttttattagattttttgaactatcagatttattaaacacctcactagtattattgtgttgattttcacac 15530272  T
Q  427 tctatttatt 436  Q
    | ||||||||    
T  15530273 tatatttatt 15530282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 219 - 289
Target Start/End: Original strand, 24226876 - 24226945
Alignment:
Q  219 ttctatggtgaagttattcaattgactttttcggtgaagttaaccctacatccaataataatgtgccacat 289  Q
    ||||||||||||||| ||||||||||||||||| ||||||| | ||||||||||||||||||| |||||||    
T  24226876 ttctatggtgaagttgttcaattgactttttcgatgaagtt-atcctacatccaataataatgcgccacat 24226945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 371 - 445
Target Start/End: Original strand, 24227014 - 24227088
Alignment:
Q  371 ttttttgaaccatcagattaaacacctcactatttttattgtgttgcctttcacactctatttatttcctttctc 445  Q
    ||||||||||||||||||||| ||| |||||| | |||| ||||||||||||||||| |||||||| ||||||||    
T  24227014 ttttttgaaccatcagattaagcacatcactaatgttatcgtgttgcctttcacactatatttattccctttctc 24227088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 219 - 307
Target Start/End: Complemental strand, 20135509 - 20135422
Alignment:
Q  219 ttctatggtgaagttattcaattgactttttcggtgaagttaaccctacatccaataataatgtgccacatttttaaatgatgtcatgt 307  Q
    |||||||||||||| ||| ||||||||||||| | | ||||| || ||||||||||||||||| |||||||| || |||||||||||||    
T  20135509 ttctatggtgaagtcattaaattgactttttcagagcagttatcc-tacatccaataataatgcgccacattgttgaatgatgtcatgt 20135422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 219 - 289
Target Start/End: Original strand, 15530066 - 15530135
Alignment:
Q  219 ttctatggtgaagttattcaattgactttttcggtgaagttaaccctacatccaataataatgtgccacat 289  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||| || |||||| |||||| |||||    
T  15530066 ttctatggtgaagttgttcaattgactttttcggtgaagtt-accctaaattcaataaaaatgtgtcacat 15530135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 370 - 447
Target Start/End: Complemental strand, 4922445 - 4922368
Alignment:
Q  370 attttttgaaccatcagattaaacacctcactatttttattgtgttgcctttcacactctatttatttcctttctcct 447  Q
    |||||||||| |||| |||||||||| |||||| | ||||||||||| ||||| |||| |||||||||| ||||||||    
T  4922445 attttttgaatcatcggattaaacacttcactagtgttattgtgttgactttcccactatatttatttcttttctcct 4922368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 219 - 311
Target Start/End: Complemental strand, 42980324 - 42980232
Alignment:
Q  219 ttctatggtgaagttattcaattgactttttcggtgaagttaaccctac-atccaataataatgtgccacatttttaaatgatgtcatgtcatg 311  Q
    ||||| |||||||| |||||||| ||||||||| |||||||| || ||| |||||||||||||||||||  | ||||||||||| |||||||||    
T  42980324 ttctacggtgaagtcattcaattaactttttcgatgaagttatcc-tacgatccaataataatgtgccaagtatttaaatgatgccatgtcatg 42980232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 371 - 447
Target Start/End: Complemental strand, 28683004 - 28682928
Alignment:
Q  371 ttttttgaaccatcagattaaacacctcactatttttattgtgttgcctttcacactctatttatttcctttctcct 447  Q
    |||||||||||||| |||||| ||  |||||| | |||||||||||||||||||||| |||||||||  ||||||||    
T  28683004 ttttttgaaccatcggattaagcaaatcactagtgttattgtgttgcctttcacactgtatttattttttttctcct 28682928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 219 - 307
Target Start/End: Original strand, 55917407 - 55917494
Alignment:
Q  219 ttctatggtgaagttattcaattgactttttcggtgaagttaaccctacatccaataataatgtgccacatttttaaatgatgtcatgt 307  Q
    |||||||||||||| ||| ||||||||||||| | |||||| | ||||||| ||||||||||| |||| ||| || |||||||||||||    
T  55917407 ttctatggtgaagtcattaaattgactttttcagagaagtt-atcctacattcaataataatgcgccaaattgttgaatgatgtcatgt 55917494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 222 - 289
Target Start/End: Original strand, 45988125 - 45988191
Alignment:
Q  222 tatggtgaagttattcaattgactttttcggtgaagttaaccctacatccaataataatgtgccacat 289  Q
    ||||||||||| |||||||||||||||||||||||||| | ||||||| ||||||| ||| |||||||    
T  45988125 tatggtgaagtcattcaattgactttttcggtgaagtt-atcctacattcaataatgatgcgccacat 45988191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 219 - 280
Target Start/End: Original strand, 42063009 - 42063069
Alignment:
Q  219 ttctatggtgaagttattcaattgactttttcggtgaagttaaccctacatccaataataat 280  Q
    |||||||||||||| |||||||||||||||| ||||||||| | ||||||| ||||||||||    
T  42063009 ttctatggtgaagtcattcaattgacttttttggtgaagtt-atcctacattcaataataat 42063069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 219 - 280
Target Start/End: Original strand, 47028106 - 47028166
Alignment:
Q  219 ttctatggtgaagttattcaattgactttttcggtgaagttaaccctacatccaataataat 280  Q
    |||||||||||||| |||||||||||||||| ||||||||| | ||||||| ||||||||||    
T  47028106 ttctatggtgaagtcattcaattgacttttttggtgaagtt-atcctacattcaataataat 47028166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 219 - 307
Target Start/End: Complemental strand, 28683152 - 28683066
Alignment:
Q  219 ttctatggtgaagttattcaattgactttttcggtgaagttaaccctacatccaataataatgtgccacatttttaaatgatgtcatgt 307  Q
    ||||||||||||||  || ||||||||||| ||||||||||| || ||||||||||||||||| | ||| || || |||||||||||||    
T  28683152 ttctatggtgaagtccttaaattgactttt-cggtgaagttatcc-tacatccaataataatgcgtcacgttgttgaatgatgtcatgt 28683066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 381 - 438
Target Start/End: Complemental strand, 42980164 - 42980107
Alignment:
Q  381 catcagattaaacacctcactatttttattgtgttgcctttcacactctatttatttc 438  Q
    ||||||||||| |||||||||| | ||||| ||||||| |||||||| ||||||||||    
T  42980164 catcagattaagcacctcactagtgttattatgttgcccttcacactatatttatttc 42980107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 331 - 436
Target Start/End: Complemental strand, 39885806 - 39885701
Alignment:
Q  331 atctcctcaatatgttccaccatagactaattttattaaattttttgaaccatcagattaaacacctcactatttttattgtgttgcctttcacactcta 430  Q
    |||| ||| |||||||||||| ||||||| |||||||| ||||||||||| ||||||||||||||||||||| | |||||||||||  ||||||||| ||    
T  39885806 atctgctcgatatgttccaccgtagactagttttattagattttttgaactatcagattaaacacctcactagtattattgtgttgattttcacactata 39885707  T
Q  431 tttatt 436  Q
    ||||||    
T  39885706 tttatt 39885701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 371 - 447
Target Start/End: Complemental strand, 1835953 - 1835877
Alignment:
Q  371 ttttttgaaccatcagattaaacacctcactatttttattgtgttgcctttcacactctatttatttcctttctcct 447  Q
    ||||||||||||||||||||||||| |||||| | |||| ||||||||||||||||| |||||||| ||||||||||    
T  1835953 ttttttgaaccatcagattaaacacatcactaatgttatcgtgttgcctttcacactatatttattccctttctcct 1835877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 371 - 447
Target Start/End: Complemental strand, 40321433 - 40321357
Alignment:
Q  371 ttttttgaaccatcagattaaacacctcactatttttattgtgttgcctttcacactctatttatttcctttctcct 447  Q
    ||||||||||||||||||||||||| |||||| | |||| ||||||||||||||||| |||||||| ||||||||||    
T  40321433 ttttttgaaccatcagattaaacacatcactaatgttatcgtgttgcctttcacactatatttattccctttctcct 40321357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 219 - 289
Target Start/End: Complemental strand, 39885913 - 39885844
Alignment:
Q  219 ttctatggtgaagttattcaattgactttttcggtgaagttaaccctacatccaataataatgtgccacat 289  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||| || |||||||||||||||||||    
T  39885913 ttctatggtgaagttgttcaattgactttttcggtgaagtt-accctaaattcaataataatgtgccacat 39885844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 219 - 307
Target Start/End: Original strand, 24782715 - 24782802
Alignment:
Q  219 ttctatggtgaagttattcaattgactttttcggtgaagttaaccctacatccaataataatgtgccacatttttaaatgatgtcatgt 307  Q
    |||||||||||||| ||| ||||||||||||| | ||||||| || ||||||||||||||||| |||||||| || |||||||||||||    
T  24782715 ttctatggtgaagtcattaaattgactttttcagagaagttatcc-tacatccaataataatgcgccacattgttgaatgatgtcatgt 24782802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 219 - 289
Target Start/End: Original strand, 6767931 - 6768000
Alignment:
Q  219 ttctatggtgaagttattcaattgactttttcggtgaagttaaccctacatccaataataatgtgccacat 289  Q
    |||||||||||||||  |||||||||||||||||||||||| || |||||||||||||||||| |||||||    
T  6767931 ttctatggtgaagttcctcaattgactttttcggtgaagtt-actctacatccaataataatgcgccacat 6768000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 219 - 281
Target Start/End: Original strand, 31480466 - 31480527
Alignment:
Q  219 ttctatggtgaagttattcaattgactttttcggtgaagttaaccctacatccaataataatg 281  Q
    |||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||    
T  31480466 ttctatggagaagtcattcaattgactttttcggtgaagtt-accctacatccaataataatg 31480527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 219 - 289
Target Start/End: Complemental strand, 40321571 - 40321502
Alignment:
Q  219 ttctatggtgaagttattcaattgactttttcggtgaagttaaccctacatccaataataatgtgccacat 289  Q
    ||||||||||||||| ||||||||||||||||| ||||||| | ||||||||||||||||||| |||||||    
T  40321571 ttctatggtgaagttgttcaattgactttttcgatgaagtt-atcctacatccaataataatgcgccacat 40321502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 219 - 289
Target Start/End: Original strand, 41405998 - 41406067
Alignment:
Q  219 ttctatggtgaagttattcaattgactttttcggtgaagttaaccctacatccaataataatgtgccacat 289  Q
    ||||||||||||||| ||||||||||||||||| ||||||| | ||||||||||||||||||| |||||||    
T  41405998 ttctatggtgaagttgttcaattgactttttcgatgaagtt-atcctacatccaataataatgcgccacat 41406067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 371 - 445
Target Start/End: Original strand, 41406136 - 41406210
Alignment:
Q  371 ttttttgaaccatcagattaaacacctcactatttttattgtgttgcctttcacactctatttatttcctttctc 445  Q
    ||||||||||||||||||||| ||| |||||| | |||| ||||||||||||||||| |||||||| ||||||||    
T  41406136 ttttttgaaccatcagattaagcacatcactaatgttatcgtgttgcctttcacactatatttattccctttctc 41406210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 219 - 272
Target Start/End: Complemental strand, 32720215 - 32720162
Alignment:
Q  219 ttctatggtgaagttattcaattgactttttcggtgaagttaaccctacatcca 272  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  32720215 ttctacggtaaagttattcaattgactttttcggtgaagttaaccctacatcca 32720162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 371 - 447
Target Start/End: Original strand, 31480604 - 31480680
Alignment:
Q  371 ttttttgaaccatcagattaaacacctcactatttttattgtgttgcctttcacactctatttatttcctttctcct 447  Q
    ||||||||||||||||||||| |||||||||| | |||||||||||  ||||||||| || ||||| ||||||||||    
T  31480604 ttttttgaaccatcagattaagcacctcactaatgttattgtgttgtttttcacactatacttattccctttctcct 31480680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 219 - 289
Target Start/End: Complemental strand, 1836091 - 1836022
Alignment:
Q  219 ttctatggtgaagttattcaattgactttttcggtgaagttaaccctacatccaataataatgtgccacat 289  Q
    ||||||||||||||| ||||||||| ||||||| ||||||| | ||||||||||||||||||| |||||||    
T  1836091 ttctatggtgaagttgttcaattgattttttcgatgaagtt-atcctacatccaataataatgcgccacat 1836022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 370 - 447
Target Start/End: Complemental strand, 30628622 - 30628545
Alignment:
Q  370 attttttgaaccatcagattaaacacctcactatttttattgtgttgcctttcacactctatttatttcctttctcct 447  Q
    ||||||| || ||||||||||| ||  |||||| | |||||||||||||||||||||| |||||||||| ||||||||    
T  30628622 attttttaaatcatcagattaagcatttcactagtattattgtgttgcctttcacactatatttatttcttttctcct 30628545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 219 - 310
Target Start/End: Complemental strand, 20174120 - 20174030
Alignment:
Q  219 ttctatggtgaagttattcaattgactttttcggtgaagttaaccctacatccaataataatgtgccacatttttaaatgatgtcatgtcat 310  Q
    |||||||||||||||    |||||||||||||||||||| |||||||||| | |||||||| | ||||| ||| | ||||||| ||||||||    
T  20174120 ttctatggtgaagttcgaaaattgactttttcggtgaag-taaccctacagctaataataacgcgccacgtttgttaatgatgccatgtcat 20174030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 402
Target Start/End: Original strand, 6768069 - 6768100
Alignment:
Q  371 ttttttgaaccatcagattaaacacctcacta 402  Q
    ||||||||||||||||||||||||||||||||    
T  6768069 ttttttgaaccatcagattaaacacctcacta 6768100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 5e-26; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 339 - 447
Target Start/End: Original strand, 45319728 - 45319836
Alignment:
Q  339 aatatgttccaccatagactaattttattaaattttttgaaccatcagattaaacacctcactatttttattgtgttgcctttcacactctatttatttc 438  Q
    ||||||||||||| |||||||  ||||||| ||||||||||| |||| ||||| |||||||||| | |||||||||||||||||||||| |||||||||     
T  45319728 aatatgttccaccgtagactagctttattagattttttgaactatcaaattaagcacctcactagtgttattgtgttgcctttcacactatatttattta 45319827  T
Q  439 ctttctcct 447  Q
     ||||||||    
T  45319828 ttttctcct 45319836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 371 - 447
Target Start/End: Complemental strand, 39242561 - 39242485
Alignment:
Q  371 ttttttgaaccatcagattaaacacctcactatttttattgtgttgcctttcacactctatttatttcctttctcct 447  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||||||| |||| |||||||||| ||||||||    
T  39242561 ttttttgaaccatcagattaaacacctcactagtgttattgtgttgcctttcgcactatatttatttcttttctcct 39242485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 219 - 307
Target Start/End: Original strand, 22105398 - 22105485
Alignment:
Q  219 ttctatggtgaagttattcaattgactttttcggtgaagttaaccctacatccaataataatgtgccacatttttaaatgatgtcatgt 307  Q
    ||||||| ||||||| ||||||||||||||||||||||||| | ||||||||||||||||||| ||||  ||||| |||||||||||||    
T  22105398 ttctatgatgaagttcttcaattgactttttcggtgaagtt-atcctacatccaataataatgcgccatgtttttgaatgatgtcatgt 22105485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 219 - 289
Target Start/End: Complemental strand, 49410599 - 49410530
Alignment:
Q  219 ttctatggtgaagttattcaattgactttttcggtgaagttaaccctacatccaataataatgtgccacat 289  Q
    ||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  49410599 ttctatggtgaagttcttcaaatgactttttcggtgaagtt-accctacatccaataataatgcgccacat 49410530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 366 - 447
Target Start/End: Original strand, 52382775 - 52382856
Alignment:
Q  366 ttaaattttttgaaccatcagattaaacacctcactatttttattgtgttgcctttcacactctatttatttcctttctcct 447  Q
    |||||||||||||  |||| |||||||||| |||||| | |||||||||||||||||||||| |||||||||| ||||||||    
T  52382775 ttaaattttttgactcatcggattaaacacttcactagtgttattgtgttgcctttcacactatatttatttcttttctcct 52382856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 370 - 447
Target Start/End: Complemental strand, 27289819 - 27289742
Alignment:
Q  370 attttttgaaccatcagattaaacacctcactatttttattgtgttgcctttcacactctatttatttcctttctcct 447  Q
    |||||||||| |||||||||||| || |||||| | ||||||||||| |||||||||| |||||||||| ||||||||    
T  27289819 attttttgaatcatcagattaaaaacttcactagtgttattgtgttgtctttcacactatatttatttcttttctcct 27289742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 219 - 307
Target Start/End: Original strand, 45346270 - 45346357
Alignment:
Q  219 ttctatggtgaagttattcaattgactttttcggtgaagttaaccctacatccaataataatgtgccacatttttaaatgatgtcatgt 307  Q
    ||||| |||||||| ||| ||||||||||||| | ||||||| || ||||||||||||||||| |||||||| || |||||||||||||    
T  45346270 ttctacggtgaagtcattaaattgactttttcagagaagttatcc-tacatccaataataatgcgccacattgttgaatgatgtcatgt 45346357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 371 - 447
Target Start/End: Complemental strand, 49410461 - 49410385
Alignment:
Q  371 ttttttgaaccatcagattaaacacctcactatttttattgtgttgcctttcacactctatttatttcctttctcct 447  Q
    ||||||||||||||||||||| |||||||||| |  |||||||||| |||||||||| ||||||||  |||||||||    
T  49410461 ttttttgaaccatcagattaagcacctcactagtgctattgtgttgtctttcacactatatttattctctttctcct 49410385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 219 - 307
Target Start/End: Complemental strand, 12983618 - 12983531
Alignment:
Q  219 ttctatggtgaagttattcaattgactttttcggtgaagttaaccctacatccaataataatgtgccacatttttaaatgatgtcatgt 307  Q
    |||||||||||||| | | ||||||||||||| | ||||||| || ||||| ||||||||||| |||||||| || |||||||||||||    
T  12983618 ttctatggtgaagtcaataaattgactttttcagagaagttatcc-tacattcaataataatgcgccacattgttgaatgatgtcatgt 12983531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 371 - 447
Target Start/End: Complemental strand, 47036204 - 47036128
Alignment:
Q  371 ttttttgaaccatcagattaaacacctcactatttttattgtgttgcctttcacactctatttatttcctttctcct 447  Q
    ||||||||||||||||||||||||| ||| || | |||||||||||  ||||||||| |||||||| ||||| ||||    
T  47036204 ttttttgaaccatcagattaaacacatcaatagtgttattgtgttgtttttcacactatatttattccctttatcct 47036128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 379 - 447
Target Start/End: Complemental strand, 17015969 - 17015903
Alignment:
Q  379 accatcagattaaacacctcactatttttattgtgttgcctttcacactctatttatttcctttctcct 447  Q
    ||||||| |||||||||||||||| | |||||||||||||||| |||  ||||||||||| ||||||||    
T  17015969 accatcatattaaacacctcactagtgttattgtgttgccttttaca--ctatttatttcttttctcct 17015903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 371 - 447
Target Start/End: Original strand, 22105547 - 22105623
Alignment:
Q  371 ttttttgaaccatcagattaaacacctcactatttttattgtgttgcctttcacactctatttatttcctttctcct 447  Q
    |||||||||| |||||||||| ||| |||||| | || ||| ||| ||||||||||| |||||||| ||||||||||    
T  22105547 ttttttgaactatcagattaagcacatcactagtgttgttgagtttcctttcacactatatttattccctttctcct 22105623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 219 - 287
Target Start/End: Original strand, 45319613 - 45319680
Alignment:
Q  219 ttctatggtgaagttattcaattgactttttcggtgaagttaaccctacatccaataataatgtgccac 287  Q
    |||||||||||||| |||||||||||||||| ||||||||| | | ||||| ||||||||||| |||||    
T  45319613 ttctatggtgaagtcattcaattgacttttttggtgaagtt-atcttacattcaataataatgcgccac 45319680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 261 - 307
Target Start/End: Complemental strand, 39242669 - 39242623
Alignment:
Q  261 accctacatccaataataatgtgccacatttttaaatgatgtcatgt 307  Q
    ||||||||||||||||||||||||||| || || |||||||||||||    
T  39242669 accctacatccaataataatgtgccacgttgttgaatgatgtcatgt 39242623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 219 - 281
Target Start/End: Complemental strand, 47036342 - 47036281
Alignment:
Q  219 ttctatggtgaagttattcaattgactttttcggtgaagttaaccctacatccaataataatg 281  Q
    |||||||||||||| ||||||||||||| |||  ||||||| ||| |||||||||||||||||    
T  47036342 ttctatggtgaagtcattcaattgacttcttcaatgaagtt-accatacatccaataataatg 47036281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 339 - 447
Target Start/End: Original strand, 7124455 - 7124561
Alignment:
Q  339 aatatgttccaccatagactaattttattaaattttttgaaccatcagattaaacacctcactatttttattgtgttgcctttcacactctatttatttc 438  Q
    ||||||||||| | |||||||| ||||||| |||||||||||||||| ||||| |||||||||| | ||||||||||  |||||||||| ||||||||||    
T  7124455 aatatgttccatcgtagactaactttattagattttttgaaccatcaaattaagcacctcactagtgttattgtgtt--ctttcacactatatttatttc 7124552  T
Q  439 ctttctcct 447  Q
     ||||||||    
T  7124553 ttttctcct 7124561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 354 - 445
Target Start/End: Complemental strand, 4181190 - 4181099
Alignment:
Q  354 agactaattttattaaattttttgaaccatcagattaaacacctcactatttttattgtgttgcctttcacactctatttatttcctttctc 445  Q
    ||||||||||||||| ||||||||||||||| ||||||  ||||||||| | |||||||||||||||||||||| |||||| || |||||||    
T  4181190 agactaattttattagattttttgaaccatcggattaagtacctcactagtcttattgtgttgcctttcacactatatttaatttctttctc 4181099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 57 - 110
Target Start/End: Complemental strand, 33697021 - 33696968
Alignment:
Q  57 gcacacaagtttttgtttgtatttcatcaaccaaatgcgttaaattacaattaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33697021 gcacacaagtttttgtttgtatttcatcaaccaaatgcgttaaattacaattaa 33696968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 371 - 447
Target Start/End: Complemental strand, 945036 - 944960
Alignment:
Q  371 ttttttgaaccatcagattaaacacctcactatttttattgtgttgcctttcacactctatttatttcctttctcct 447  Q
    ||||||||||||||||||||| ||||||| || | ||||||||||| |||| ||| | |||||||| ||||||||||    
T  945036 ttttttgaaccatcagattaagcacctcattagtgttattgtgttgtcttttacattatatttattccctttctcct 944960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 219 - 289
Target Start/End: Original strand, 7124340 - 7124409
Alignment:
Q  219 ttctatggtgaagttattcaattgactttttcggtgaagttaaccctacatccaataataatgtgccacat 289  Q
    ||||| |||||||| ||||||||||||||||| |||||||| | ||||||| ||||||||||| |||||||    
T  7124340 ttctacggtgaagtcattcaattgactttttcagtgaagtt-atcctacattcaataataatgcgccacat 7124409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 370 - 447
Target Start/End: Complemental strand, 12945590 - 12945513
Alignment:
Q  370 attttttgaaccatcagattaaacacctcactatttttattgtgttgcctttcacactctatttatttcctttctcct 447  Q
    ||||||| || ||| ||||||| ||  |||||| | |||||||||||||||||||||| |||||||||| ||||||||    
T  12945590 attttttaaatcattagattaagcatttcactagtattattgtgttgcctttcacactatatttatttcttttctcct 12945513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 57 - 102
Target Start/End: Complemental strand, 33676309 - 33676264
Alignment:
Q  57 gcacacaagtttttgtttgtatttcatcaaccaaatgcgttaaatt 102  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||    
T  33676309 gcacacaagtttttgtttgtatttcatcaacaaaatgcgctaaatt 33676264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 57 - 94
Target Start/End: Complemental strand, 33688695 - 33688658
Alignment:
Q  57 gcacacaagtttttgtttgtatttcatcaaccaaatgc 94  Q
    ||||||||||||||||||||||||||||||||||||||    
T  33688695 gcacacaagtttttgtttgtatttcatcaaccaaatgc 33688658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 222 - 281
Target Start/End: Complemental strand, 4181317 - 4181259
Alignment:
Q  222 tatggtgaagttattcaattgactttttcggtgaagttaaccctacatccaataataatg 281  Q
    ||||||||||||||||||||||||||||   ||||||| | |||||||||||||||||||    
T  4181317 tatggtgaagttattcaattgactttttttatgaagtt-atcctacatccaataataatg 4181259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 222 - 310
Target Start/End: Complemental strand, 12477966 - 12477879
Alignment:
Q  222 tatggtgaagttattcaattgactttttcggtgaagttaaccctacatccaataataatgtgccacatttttaaatgatgtcatgtcat 310  Q
    |||||||||||| |||||||||||||| |||||||| ||||| |||| | |||||||  | ||||||||| | ||||||| ||| ||||    
T  12477966 tatggtgaagttcttcaattgacttttccggtgaag-taaccatacaactaataatatcgcgccacatttgttaatgatgccatatcat 12477879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 310
Target Start/End: Complemental strand, 26855384 - 26855333
Alignment:
Q  259 taaccctacatccaataataatgtgccacatttttaaatgatgtcatgtcat 310  Q
    |||||||| | |||||||||||||| ||  ||||||||||||||||||||||    
T  26855384 taaccctataaccaataataatgtgtcatgtttttaaatgatgtcatgtcat 26855333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 281
Target Start/End: Complemental strand, 945174 - 945113
Alignment:
Q  219 ttctatggtgaagttattcaattgactttttcggtgaagttaaccctacatccaataataatg 281  Q
    |||||||||||||||  |||||||||||||| | ||||||| || |||||| |||||||||||    
T  945174 ttctatggtgaagttcctcaattgacttttttgatgaagtt-actctacattcaataataatg 945113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 95
Target Start/End: Complemental strand, 33667720 - 33667683
Alignment:
Q  58 cacacaagtttttgtttgtatttcatcaaccaaatgcg 95  Q
    |||||||||||||||| ||||||| |||||||||||||    
T  33667720 cacacaagtttttgttcgtatttcttcaaccaaatgcg 33667683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 219 - 289
Target Start/End: Original strand, 33751512 - 33751581
Alignment:
Q  219 ttctatggtgaagttattcaattgactttttcggtgaagttaaccctacatccaataataatgtgccacat 289  Q
    ||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  33751512 ttctatggtgaagtcgttcaattgactttttcggtgaagtt-accctacatccaataataatgtgccacat 33751581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 219 - 287
Target Start/End: Complemental strand, 7091187 - 7091120
Alignment:
Q  219 ttctatggtgaagttattcaattgactttttcggtgaagttaaccctacatccaataataatgtgccac 287  Q
    ||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  7091187 ttctatggtgaagtcgttcaattgactttttcggtgaagtt-accctacatccaataataatgtgccac 7091120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 331 - 445
Target Start/End: Complemental strand, 37080696 - 37080582
Alignment:
Q  331 atctcctcaatatgttccaccatagactaattttattaaattttttgaaccatcagattaaacacctcactatttttattgtgttgcctttcacactcta 430  Q
    |||| |||||||| ||| |||  |||||| |||||||| ||||||||||||||| ||||||  ||||||||| | ||||||||||| |||||||||| ||    
T  37080696 atctgctcaatatattctaccgaagactagttttattagattttttgaaccatcggattaagtacctcactagtcttattgtgttgtctttcacactata 37080597  T
Q  431 tttatttcctttctc 445  Q
    |||| || |||||||    
T  37080596 tttaatttctttctc 37080582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 219 - 307
Target Start/End: Complemental strand, 16431949 - 16431862
Alignment:
Q  219 ttctatggtgaagttattcaattgactttttcggtgaagttaaccctacatccaataataatgtgccacatttttaaatgatgtcatgt 307  Q
    |||||||||||||| ||| ||||||||||||| | ||||||| || ||||||||||||||||| |||||||| || |||||||||||||    
T  16431949 ttctatggtgaagtcattaaattgactttttcagagaagttatcc-tacatccaataataatgcgccacattgttgaatgatgtcatgt 16431862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 219 - 307
Target Start/End: Complemental strand, 17692692 - 17692605
Alignment:
Q  219 ttctatggtgaagttattcaattgactttttcggtgaagttaaccctacatccaataataatgtgccacatttttaaatgatgtcatgt 307  Q
    |||||||||||||| ||| ||||||||||||| | ||||||| || ||||||||||||||||| |||||||| || |||||||||||||    
T  17692692 ttctatggtgaagtcattaaattgactttttcagagaagttatcc-tacatccaataataatgcgccacattgttgaatgatgtcatgt 17692605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 219 - 307
Target Start/End: Original strand, 37259677 - 37259764
Alignment:
Q  219 ttctatggtgaagttattcaattgactttttcggtgaagttaaccctacatccaataataatgtgccacatttttaaatgatgtcatgt 307  Q
    |||||||||||||| ||| ||||||||||||| | ||||||| || ||||||||||||||||| |||||||| || |||||||||||||    
T  37259677 ttctatggtgaagtcattaaattgactttttcagagaagttatcc-tacatccaataataatgcgccacattgttgaatgatgtcatgt 37259764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 219 - 307
Target Start/End: Original strand, 14805580 - 14805667
Alignment:
Q  219 ttctatggtgaagttattcaattgactttttcggtgaagttaaccctacatccaataataatgtgccacatttttaaatgatgtcatgt 307  Q
    |||||||||||||| ||| |||||| |||||| | ||||||| || ||||||||||||||||| |||||||| || |||||||||||||    
T  14805580 ttctatggtgaagtcattaaattgaatttttcagagaagttatcc-tacatccaataataatgcgccacattattgaatgatgtcatgt 14805667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 219 - 286
Target Start/End: Complemental strand, 37080803 - 37080737
Alignment:
Q  219 ttctatggtgaagttattcaattgactttttcggtgaagttaaccctacatccaataataatgtgcca 286  Q
    ||||||||||||||||||||||||||||||| | ||||||| | ||||||||||||||||||| ||||    
T  37080803 ttctatggtgaagttattcaattgacttttttgatgaagtt-atcctacatccaataataatgcgcca 37080737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 370 - 447
Target Start/End: Complemental strand, 14101907 - 14101830
Alignment:
Q  370 attttttgaaccatcagattaaacacctcactatttttattgtgttgcctttcacactctatttatttcctttctcct 447  Q
    |||||||||| |||| |||||||||  |||||| | ||||||||||||||||| |||| |||||||||| ||||||||    
T  14101907 attttttgaatcatcggattaaacagttcactagtgttattgtgttgcctttcccactatatttatttcttttctcct 14101830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 227 - 307
Target Start/End: Complemental strand, 15332823 - 15332744
Alignment:
Q  227 tgaagttattcaattgactttttcggtgaagttaaccctacatccaataataatgtgccacatttttaaatgatgtcatgt 307  Q
    |||||| ||| ||||||||||||| | ||||||| || ||||||||||||||||| |||||||| || |||||||||||||    
T  15332823 tgaagtcattaaattgactttttcagagaagttatcc-tacatccaataataatgcgccacattgttgaatgatgtcatgt 15332744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 336 - 398
Target Start/End: Complemental strand, 7091075 - 7091013
Alignment:
Q  336 ctcaatatgttccaccatagactaattttattaaattttttgaaccatcagattaaacacctc 398  Q
    |||||||| ||||||| |||||||| ||||||| |||||||||||||||| ||||| ||||||    
T  7091075 ctcaatatattccaccgtagactaactttattagattttttgaaccatcaaattaatcacctc 7091013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 219 - 289
Target Start/End: Original strand, 30778298 - 30778367
Alignment:
Q  219 ttctatggtgaagttattcaattgactttttcggtgaagttaaccctacatccaataataatgtgccacat 289  Q
    ||||| ||||||||| || |||||||||||||| ||||||| || |||||| |||||||||||||||||||    
T  30778298 ttctacggtgaagttctttaattgactttttcgatgaagtt-actctacattcaataataatgtgccacat 30778367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 336 - 398
Target Start/End: Original strand, 33751624 - 33751686
Alignment:
Q  336 ctcaatatgttccaccatagactaattttattaaattttttgaaccatcagattaaacacctc 398  Q
    |||||||| ||||||| |||||||| ||||||| |||||||||||||||| ||||| ||||||    
T  33751624 ctcaatatattccaccgtagactaactttattagattttttgaaccatcaaattaatcacctc 33751686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 337 - 426
Target Start/End: Original strand, 30778411 - 30778500
Alignment:
Q  337 tcaatatgttccaccatagactaattttattaaattttttgaaccatcagattaaacacctcactatttttattgtgttgcctttcacac 426  Q
    |||||||||| |||| |||| ||||||||||| ||| ||| ||| || ||||||| |||||||||  | ||||| |||| ||||||||||    
T  30778411 tcaatatgttgcaccgtagattaattttattagattgtttaaactattagattaagcacctcacttatcttattatgttacctttcacac 30778500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0896 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: scaffold0896
Description:

Target: scaffold0896; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 339 - 447
Target Start/End: Complemental strand, 1909 - 1802
Alignment:
Q  339 aatatgttccaccatagactaattttattaa-attttttgaaccatcagattaaacacctcactatttttattgtgttgcctttcacactctatttattt 437  Q
    ||||||||||| | |||||||| |||||||  |||||||||||||||| ||||| |||||||||| | ||||||||||  |||||||||| |||||||||    
T  1909 aatatgttccatcgtagactaactttattagtattttttgaaccatcaaattaagcacctcactagtgttattgtgtt--ctttcacactatatttattt 1812  T
Q  438 cctttctcct 447  Q
    | ||||||||    
T  1811 cttttctcct 1802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0896; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 219 - 289
Target Start/End: Complemental strand, 2024 - 1955
Alignment:
Q  219 ttctatggtgaagttattcaattgactttttcggtgaagttaaccctacatccaataataatgtgccacat 289  Q
    ||||| |||||||| ||||||||||||||||| |||||||| | ||||||| ||||||||||| |||||||    
T  2024 ttctacggtgaagtcattcaattgactttttcagtgaagtt-atcctacattcaataataatgcgccacat 1955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0685 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0685
Description:

Target: scaffold0685; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 366 - 447
Target Start/End: Original strand, 6788 - 6869
Alignment:
Q  366 ttaaattttttgaaccatcagattaaacacctcactatttttattgtgttgcctttcacactctatttatttcctttctcct 447  Q
    |||||||||||||  |||| |||||||||| |||||| | |||||||||||||||||||||| |||||||||| ||||||||    
T  6788 ttaaattttttgactcatcggattaaacacttcactagtgttattgtgttgcctttcacactatatttatttcttttctcct 6869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 219 - 307
Target Start/End: Original strand, 25098 - 25185
Alignment:
Q  219 ttctatggtgaagttattcaattgactttttcggtgaagttaaccctacatccaataataatgtgccacatttttaaatgatgtcatgt 307  Q
    |||||||||||||| ||| ||||||||||||| | ||||||| || ||||||||||||||||| |||||||| || |||||||||||||    
T  25098 ttctatggtgaagtcattaaattgactttttcagagaagttatcc-tacatccaataataatgcgccacattgttgaatgatgtcatgt 25185  T

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Target: scaffold0016 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 72 - 118
Target Start/End: Original strand, 83625 - 83671
Alignment:
Q  72 tttgtatttcatcaaccaaatgcgttaaattacaattaatgtctact 118  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||||    
T  83625 tttgtatttcatcaaccaaatgcgttaaattaaaatgaatgtctact 83671  T

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Target: scaffold0285 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0285
Description:

Target: scaffold0285; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 425
Target Start/End: Original strand, 17653 - 17737
Alignment:
Q  338 caatatgttccaccatagactaattttattaaattttttgaaccatcagattaaacacctcactatttttattgtgttgcctttcaca 425  Q
    |||||||||||| ||| ||| |||||| |||  |||||| |||||||||||||| ||||||| || | |  |||||||||||||||||    
T  17653 caatatgttccatcatggaccaattttgttagttttttt-aaccatcagattaagcacctcattagtgt--ttgtgttgcctttcaca 17737  T

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