View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21205_high_16 (Length: 439)
Name: NF21205_high_16
Description: NF21205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21205_high_16 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 394; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 423
Target Start/End: Complemental strand, 33302048 - 33301627
Alignment:
| Q |
1 |
tacattttcaaagactaaaatacctatttcctctcttgtgtatgatatagttaacattttcctattggaattttaacaggagagctattatgacaaggag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33302048 |
tacattttcaaagactaaaatacctatttcctctcttgtgtatgatatagttaacattt-cctattggaattttaacaggagagctattatgacaaggag |
33301950 |
T |
|
| Q |
101 |
ggcagtgagggtgaattcacaattgaaatcacacaaaagatttgctaatgcatttccaagatattgcaaacttgttgataatgccagactctattgcaca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33301949 |
ggcagtgagggtgaattcacaattgaaatcacacaaaagatttgctaatgcatttccaagatattgcaaacttgttgataatgccagactctattgcaca |
33301850 |
T |
|
| Q |
201 |
aatgatgttggggtcccaccaaaggtacatgaacannnnnnnctatcttgtgattgattttacactttactagtagtaaaatgtgaagagggtaattttc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33301849 |
aatgatgttggggtcccaccaaaggtacatgaacatttttttctatcttgtgattgattttacactttactagtagtaaaatgtgaagagggtaattttc |
33301750 |
T |
|
| Q |
301 |
tttttcatacaaaacagcttattgggtggaaggatggtgataacaatctattagtggatcctgaagacataaaaagcttgaacaatgtaacaagtttgaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33301749 |
tttttcatacaaaacagcttattgggtggaaggatggtgataacaatctattagtggatcctgaagacataaaaagcttgaacaatgtaacaagtttgaa |
33301650 |
T |
|
| Q |
401 |
tactgaagctgattccatctatg |
423 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
33301649 |
tactgaagctgattccatctatg |
33301627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 49 - 420
Target Start/End: Complemental strand, 33250397 - 33250013
Alignment:
| Q |
49 |
agttaacattttcctattggaattttaacaggagagctattatgacaaggagggcagtgagggtgaattcacaattgaaatcacacaaaagatttgctaa |
148 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||| ||||||||||||||||| |
|
|
| T |
33250397 |
agttaacattttccttttggaattttaacaggagagctattatgacagggagggcagtgagggtgaattcacagttgcaatctcacaaaagatttgctaa |
33250298 |
T |
|
| Q |
149 |
tgcatttccaagatattgcaaacttgttgataatgccagactctattgcacaaatgatgttggggtcccaccaaaggtacatgaacannnnnnnctatc- |
247 |
Q |
| |
|
||||||||||| ||| |||||||||||||| | ||| || |||||||||||| ||| |||||| | |||||||||||| | |||| || || |
|
|
| T |
33250297 |
tgcatttccaaaatactgcaaacttgttgacagtgctaggctctattgcacagatgctgttggtggtccaccaaaggtaaa--aacaggagcaactttcc |
33250200 |
T |
|
| Q |
248 |
----ttgtgattgattttacact---ttactagtagta---------aaatgtgaagagggtaattttctttttcatacaaaacagcttattgggtggaa |
331 |
Q |
| |
|
|||||||||| |||||||| ||||||| |||| |||||| |||| | |||||||| |||||| ||||||||||||||||| ||||| |
|
|
| T |
33250199 |
tcgattgtgattga-tttacactttattactagcagtattaaaattaaaatgtcaagaagataattttc-ttttcacacaaaacagcttattggatggaa |
33250102 |
T |
|
| Q |
332 |
ggatggtgataacaatctattagtggatcctgaagacataaaaagcttgaacaatgtaacaagtttgaatactgaagctgattccatct |
420 |
Q |
| |
|
|||||||||| |||||||| ||| |||||||| || || ||||||||||| |||||| || |||| |||| ||||||||||||||||| |
|
|
| T |
33250101 |
ggatggtgatcacaatctactagaggatcctgtaggtatcaaaagcttgaaaaatgtagcaggtttcaataatgaagctgattccatct |
33250013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 49 - 420
Target Start/End: Complemental strand, 33270569 - 33270185
Alignment:
| Q |
49 |
agttaacattttcctattggaattttaacaggagagctattatgacaaggagggcagtgagggtgaattcacaattgaaatcacacaaaagatttgctaa |
148 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||| ||||||||||||||||| |
|
|
| T |
33270569 |
agttaacattttccttttggaattttaacaggagagctattatgacagggagggcagtgagggtgaattcacagttgcaatctcacaaaagatttgctaa |
33270470 |
T |
|
| Q |
149 |
tgcatttccaagatattgcaaacttgttgataatgccagactctattgcacaaatgatgttggggtcccaccaaaggtacatgaacannnnnnnctatc- |
247 |
Q |
| |
|
||||||||||| ||| |||||||||||||| | ||| || |||||||||||| ||| |||||| | |||||||||||| | |||| || || |
|
|
| T |
33270469 |
tgcatttccaaaatactgcaaacttgttgacagtgctaggctctattgcacagatgctgttggtggtccaccaaaggtaaa--aacaggagcaactttcc |
33270372 |
T |
|
| Q |
248 |
----ttgtgattgattttacact---ttactagtagta---------aaatgtgaagagggtaattttctttttcatacaaaacagcttattgggtggaa |
331 |
Q |
| |
|
|||||||||| |||||||| ||||||| |||| |||||| |||| | |||||||| |||||| ||||||||||||||||| ||||| |
|
|
| T |
33270371 |
tcgattgtgattga-tttacactttattactagcagtattaaaattaaaatgtcaagaagataattttc-ttttcacacaaaacagcttattggatggaa |
33270274 |
T |
|
| Q |
332 |
ggatggtgataacaatctattagtggatcctgaagacataaaaagcttgaacaatgtaacaagtttgaatactgaagctgattccatct |
420 |
Q |
| |
|
|||||||||| |||||||| ||| |||||||| || || ||||||||||| |||||| || |||| |||| ||||||||||||||||| |
|
|
| T |
33270273 |
ggatggtgatcacaatctactagaggatcctgtaggtatcaaaagcttgaaaaatgtagcaggtttcaataatgaagctgattccatct |
33270185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 76 - 227
Target Start/End: Complemental strand, 33310277 - 33310126
Alignment:
| Q |
76 |
acaggagagctattatgacaaggagggcagtgagggtgaattcacaattgaaatcacacaaaagatttgctaatgcatttccaagatattgcaaacttgt |
175 |
Q |
| |
|
||||||||||||| ||||||| |||||||| |||||||| |||||| || |||| |||||||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
33310277 |
acaggagagctatcatgacaaaaagggcagtaagggtgaaatcacaactggaatctcacaaaagatttgctaatgcatttccaaaatattgcgaacttgt |
33310178 |
T |
|
| Q |
176 |
tgataatgccagactctattgcacaaatgatgttggggtcccaccaaaggta |
227 |
Q |
| |
|
||| | ||| || || |||| ||||| ||||||| | | |||||||||||| |
|
|
| T |
33310177 |
tgacagtgctaggctatattacacaagtgatgttcgtggtccaccaaaggta |
33310126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University