View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21205_high_18 (Length: 432)
Name: NF21205_high_18
Description: NF21205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21205_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 19 - 419
Target Start/End: Complemental strand, 6968112 - 6967712
Alignment:
| Q |
19 |
gttccaaaacatggttaaggtaagatttctcaacgaaatcgcgatgactacgatgaaatgtgagaaggtagaatcttttgtctgaagctggatagaatga |
118 |
Q |
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| T |
6968112 |
gttccaaaacatggttaaggtaagatttctcaacgaaatcgcgatgactacgatgaaatgtgagaaggtagaatcttttgtctgaagctggatagaatga |
6968013 |
T |
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| Q |
119 |
aacagaatttgtgttggggacaatcttgattagactccaaacaaacttaaccccttcaaactcatcataaaacttttgtctttcatccatctttagaact |
218 |
Q |
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| T |
6968012 |
aacagaatttgtgttggggacaatcttgattagactccaaacaaacttaaccccttcaaactcatcataaaacttttgtctttcatccatctttagaact |
6967913 |
T |
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| Q |
219 |
aaagactttctcacatattcaccttggagtttctttgcttggttggttgatttagatgttaagtagttttcaatgtataagaaagcttcattggttctca |
318 |
Q |
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| T |
6967912 |
aaagactttctcacatattcaccttggagtttctttgcttggttggttgatttagatgttaagtagttttcaatgtataagaaagcttcattggttctca |
6967813 |
T |
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| Q |
319 |
tataatcaccaatgttctcaaagaatctaacctcaacaaaagggtaacaaaagttggctaatttctctgagaatttctcaatgagtgcatgaacttgatg |
418 |
Q |
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| T |
6967812 |
tataatcaccaatgttctcaaagaatctaacctcaacaaaagggtaacaaaagttggctaatttctctgagaatttctcaatgagtgcatgaacttgatg |
6967713 |
T |
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| Q |
419 |
a |
419 |
Q |
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| T |
6967712 |
a |
6967712 |
T |
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