View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21205_high_19 (Length: 428)
Name: NF21205_high_19
Description: NF21205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21205_high_19 |
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Alignment Details
Target: chr5 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 25 - 420
Target Start/End: Complemental strand, 19782923 - 19782528
Alignment:
| Q |
25 |
aaacacgcagacttggtttctagtttgtgtatgtgatgatttattttcaaatcatcttaagtttgtttttaggaagatgattgattttgaaaatgaatgt |
124 |
Q |
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| T |
19782923 |
aaacacgcagacttggtttctagtttgtgtatgtgatgatttattttcaaattatcttaagtttgtttttaagaagatgattgattttgaaaatgaatgt |
19782824 |
T |
|
| Q |
125 |
gttttagttgaccgtgtccattcttttctgccttagtatcaaagtcctcaagttgcatttcatgaataattttgtttagaacaatcactagtgctagatc |
224 |
Q |
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| T |
19782823 |
gttttagttgaccgtgtccattcttttctgccttaatatcaaattcctcaagttgcatttcatgaataattttgtttagaacaatcactagtgctagatc |
19782724 |
T |
|
| Q |
225 |
agtttgtacaagattctcaaatgttcatctgttgtgatatttgaagctattaattaggagcacaatactttatttgtaattgtcgtgtggttacacatta |
324 |
Q |
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| T |
19782723 |
agtttgtacaagattctcaaatgttcatctgttgtgatatttgaagctattaattaagaacacaatactttatttgtaattgtcatgtggttacacatta |
19782624 |
T |
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| Q |
325 |
ggagctgttactaataccatcatgagcagtatattaaaatatccataactgttcaatggttatacttgtgtccgtttctttattttgagtataatc |
420 |
Q |
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| T |
19782623 |
ggagctgttactaataccatcatgagcagtatattaaaatatccataattgttcaatggttatacttgtgtctgtttctttattttgagtataatc |
19782528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 92 - 420
Target Start/End: Complemental strand, 16632754 - 16632424
Alignment:
| Q |
92 |
tttaggaagatgattgattttgaaaatgaatgtgttttagttgaccgtgtccattcttttctgccttagtatcaaagtcctcaagttgcatttcatgaat |
191 |
Q |
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||||||||| | |||||||||||||||| |||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||| ||| |||||| |
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| T |
16632754 |
tttaggaagctaattgattttgaaaatggatgtgttttagttgactgtgtccattcttttctgcgttaagatcaaagtcctcaagttgccttttatgaat |
16632655 |
T |
|
| Q |
192 |
aattttgtttagaacaatcactagtgctagatcagtttgtacaagattctcaaatgttcatctgttgtgatatttgaagctattaattaggagcacaata |
291 |
Q |
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|||||||||| | |||| || || |||||||||| |||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||| | || |
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| T |
16632654 |
aattttgtttgggacaaccattaatgctagatcaatttgtacatgattctcaaatgtgcatctgttgtgatatttgaaactattaattaggagcaaatta |
16632555 |
T |
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| Q |
292 |
ctttatttgtaattgtcgtgtggttacacattaggagctgttactaataccatcatgagcagtatattaaaatatccataactgttcaatggttatactt |
391 |
Q |
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| T |
16632554 |
ctttagtcgtaattgtccggtagttacacattaggtgctgttaataataccatcatgaatggtatattaaaacatccatagttgttcaatggttatactt |
16632455 |
T |
|
| Q |
392 |
gtgtccgtttctttattt--tgagtataatc |
420 |
Q |
| |
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|| | |||||||||||| ||||||||||| |
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| T |
16632454 |
gtatatgtttctttattttatgagtataatc |
16632424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 21 - 324
Target Start/End: Original strand, 39865870 - 39866173
Alignment:
| Q |
21 |
atcgaaacacgcagacttggtttctagtttgtgtatgtgatgatttattttcaaatcatcttaagtttgtttttaggaagatgattgattttgaaaatga |
120 |
Q |
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| T |
39865870 |
atcgaaacacgcagacttggtt-ctagtttatgtatgtgatgatttattttcaaattatcttaagtttgtttttagaaagatgattgattttgaaaatga |
39865968 |
T |
|
| Q |
121 |
atgtgttttagttgaccgtgtccattcttttctgccttagtatcaaagtcctcaagttgcatttcatgaataattttgtttagaacaatcactagtgcta |
220 |
Q |
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| T |
39865969 |
atgtgttttagtttaccgtgtcccttcttttctgccttaatatcaaagtcctcaagttgcgtttcatgaataattttgtttagaacaatcactagtgtta |
39866068 |
T |
|
| Q |
221 |
gatcagtttgtacaagattctcaaatgttcatctgttgtgatatttgaagctattaattaggagcacaatactttatttgtaattgtcgtgtgg-ttaca |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||| ||||| |
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| T |
39866069 |
gatcagtttgtacaagattctcaaatgttcatctgttgtgatatttgaagctattatttaggagcacaatactttattcgtaattgtcatgtggtttaca |
39866168 |
T |
|
| Q |
320 |
catta |
324 |
Q |
| |
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||||| |
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| T |
39866169 |
catta |
39866173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 363 - 420
Target Start/End: Original strand, 39866173 - 39866230
Alignment:
| Q |
363 |
atatccataactgttcaatggttatacttgtgtccgtttctttattttgagtataatc |
420 |
Q |
| |
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|||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
39866173 |
atatccataagtgttcaatggttatacttgtgtctgtttctttattttgagtataatc |
39866230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 122 - 420
Target Start/End: Complemental strand, 248984 - 248690
Alignment:
| Q |
122 |
tgtgttttagttgaccgtgtccattcttttctgccttagtatcaaagtcctcaagttgcatttcatgaataattttgtttagaacaatcactagtgctag |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
248984 |
tgtgttttagttgaccgtgtccattcttttctgccttaatatcaaagtcctcaagttgcatttcatgaataattttgtttagaacaatcactattgctag |
248885 |
T |
|
| Q |
222 |
atcagtttgtacaagattctcaaatgttcatctgttgtgatatttgaagctattaattaggagcacaatactttatttgtaattgtcgtgtggttacaca |
321 |
Q |
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| T |
248884 |
atcagtttttacaagattctcaaatgttcatccattgtgatatttgaagctattaattaggagcacaatactttattggtaattgtcatgtggttacaca |
248785 |
T |
|
| Q |
322 |
ttaggagctgttactaataccatcatgagcagtatattaaaatatccataactgttcaatg---gttatacttgtgtccgtttctttattttgagtataa |
418 |
Q |
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| T |
248784 |
t-------tgttactaataccatcatgagcagtatattaaaatatccataattgttcaatggttgttatacttgtgtctgtttctttattttgagtataa |
248692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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