View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21205_high_2 (Length: 762)

Name: NF21205_high_2
Description: NF21205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21205_high_2
NF21205_high_2
[»] chr3 (4 HSPs)
chr3 (19-745)||(798434-799146)
chr3 (289-392)||(25034956-25035059)
chr3 (269-391)||(44119095-44119218)
chr3 (414-646)||(25034697-25034929)
[»] chr7 (4 HSPs)
chr7 (282-392)||(7395288-7395398)
chr7 (289-387)||(19417738-19417836)
chr7 (333-388)||(29020804-29020859)
chr7 (294-359)||(27129079-27129144)
[»] chr4 (2 HSPs)
chr4 (289-378)||(10583607-10583696)
chr4 (449-588)||(10583387-10583527)
[»] chr2 (1 HSPs)
chr2 (265-384)||(15583100-15583220)
[»] chr1 (2 HSPs)
chr1 (298-392)||(20618151-20618244)
chr1 (544-637)||(12830986-12831079)
[»] chr5 (1 HSPs)
chr5 (281-388)||(18222032-18222139)
[»] chr6 (1 HSPs)
chr6 (555-690)||(24967968-24968105)


Alignment Details
Target: chr3 (Bit Score: 509; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 19 - 745
Target Start/End: Original strand, 798434 - 799146
Alignment:
Q  19 ctctctggttcgttgggaaaagaaggcttgcttagaaaattttacataacagaacataaactttgtttaacaagcgaaaatcaatctaatttgacgcatt 118  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  798434 ctctctggttccttgggaaaagaaggcttgcttagaaaattttacagaacagaacataagctttgtttaacaagcgaaaatcaatctaatttgacgcatt 798533  T
Q  119 ccccatcaacgccatcattttgataaaaaataatttatgactttcctcgtacaggttctctctaattcagccataaatctagatccagtcataaatctat 218  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  798534 ccccatcaacgccatcattttgataaaaaatgatttatgattttcctcgtacaggttctctctaattcagccataaatccagatccaatcataaatctat 798633  T
Q  219 aaacaaactcgtaatacatgtcctctctcattcttaactttaacagcatctaatcccaacacaaagagattttagttatccatgatatgcataactaaca 318  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||         ||||||||    
T  798634 aaacagactcgtaatacatgttctctctcattcttaactttaacaacatccaatcccaacacaaggagattttagttatccat---------aactaaca 798724  T
Q  319 taagagacatcatagatgttggagaagcatcaacaaacttgattccaagcttccttgccctccaatggtgactcctannnnnnnnnnnnnnnnnnatttt 418  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||                   |||||    
T  798725 taagagacatcatagatgttggcgaagcatcaacaaacttgattccaagcttcctagccctccaatggtgactcctgctctctgtctctctctctatttt 798824  T
Q  419 ggttcgattttaacaatggttaactttacagaaatgacatacacctttatttatacaggttcttaaatgttaacttctctaagaaaagtaaggcccgcct 518  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||||| ||||||||||||||||||    
T  798825 ggttcgattttaacaattgttaactttacagaaatgacatacaccttaatttatacaggtacataaatgttaacttctctaggaaaagtaaggcccgcct 798924  T
Q  519 agccaactgaagtttcttctgtcgaggaaaaacaagttgtcttcaaatatttccttgaaccaccttagttcacctagaggaccaaatctcgcctagcaaa 618  Q
    |||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  798925 agccaactgaagtttcttctgttgaggaaaaacaagttgtcttcagatattttcttgaaccaccttagttcacctagaggaccaaatctcgcctagcaaa 799024  T
Q  619 ccgactttggcttttccttcaagaactccgttttggctcccattcacctagctcagctcgccaagtgaatcaggcttttcaccagatgtctcatatgatc 718  Q
    |||||||||||||||||||| || |||||||||||||     ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  799025 ccgactttggcttttccttcgaggactccgttttggc-----ttcacctagctcagctcgccaagcgaatcaagcttttcaccagatgtctcatatgatc 799119  T
Q  719 cgccctaacttctagcgcatgtgcttg 745  Q
     ||||||||||||||||||||||||||    
T  799120 tgccctaacttctagcgcatgtgcttg 799146  T

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Target: chr3; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 289 - 392
Target Start/End: Complemental strand, 25035059 - 25034956
Alignment:
Q  289 tttagttatccatgatatgcataactaacataagagacatcatagatgttggagaagcatcaacaaacttgattccaagcttccttgccctccaatggtg 388  Q
    ||||||||||||| | |||||||||||||||| ||||  | ||||||||||||||||||||||||| ||||||||||| ||||||   ||||||||||||    
T  25035059 tttagttatccataaaatgcataactaacataggagagttgatagatgttggagaagcatcaacaagcttgattccaatcttcctaaacctccaatggtg 25034960  T
Q  389 actc 392  Q
    ||||    
T  25034959 actc 25034956  T

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Target: chr3; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 269 - 391
Target Start/End: Complemental strand, 44119218 - 44119095
Alignment:
Q  269 taatcccaacacaaa-gagattttagttatccatgatatgcataactaacataagagacatcatagatgttggagaagcatcaacaaacttgattccaag 367  Q
    ||||||||||||||| |||| ||||||||  |||| |||| |||||||||||||||||  | ||||||||| | ||||| ||||||| ||||||| ||||    
T  44119218 taatcccaacacaaaagagagtttagttactcatgctatgaataactaacataagagagttgatagatgtttgtgaagcgtcaacaagcttgatttcaag 44119119  T
Q  368 cttccttgccctccaatggtgact 391  Q
    |||||| |||||||||||||||||    
T  44119118 cttcctagccctccaatggtgact 44119095  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 414 - 646
Target Start/End: Complemental strand, 25034929 - 25034697
Alignment:
Q  414 attttggttcgattttaacaatggttaactttacagaaatgacatacacctttatttatacaggttcttaaatgttaacttctctaagaaaagtaaggcc 513  Q
    ||||||||||| ||||| |||||| ||| | ||| ||| |||| ||||||| |||||||| ||||  | ||||||||| |||  || || ||||||||      
T  25034929 attttggttcggtttta-caatggctaattctactgaattgacctacacctctatttatagaggtcttgaaatgttaagttcgttaggagaagtaaggat 25034831  T
Q  514 cgcctagccaactgaagtttcttctgtcg-aggaaaaacaagttgtcttcaaatatttccttgaaccaccttagttcacctagaggaccaaatctcgcct 612  Q
    | | |||| ||  || ||||| ||| | | ||||||||  |||||| |||  |||||| | | |||||||||||||| | |||  ||||| ||||||| |    
T  25034830 cacttagcgaatcgaggtttcatctttgggaggaaaaatcagttgtgttcggatattttcataaaccaccttagttcgcttagcagaccacatctcgctt 25034731  T
Q  613 agcaaaccgactttggcttttccttcaagaactc 646  Q
    | ||||||  |||||||||||||||| |||||||    
T  25034730 atcaaaccacctttggcttttccttctagaactc 25034697  T

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Target: chr7 (Bit Score: 55; Significance: 3e-22; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 282 - 392
Target Start/End: Original strand, 7395288 - 7395398
Alignment:
Q  282 aagagattttagttatccatgatatgcataactaacataagagacatcatagatgttggagaagcatcaacaaacttgattccaagcttccttgccctcc 381  Q
    |||||| |||||||| |||||||||  | ||| |||||||||||  | |||| |||||||||||||||||||| |||||||||||| ||||| ||||| |    
T  7395288 aagagagtttagttacccatgatatatagaacgaacataagagagttgatagctgttggagaagcatcaacaagcttgattccaagattcctagcccttc 7395387  T
Q  382 aatggtgactc 392  Q
    |||||||||||    
T  7395388 aatggtgactc 7395398  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 289 - 387
Target Start/End: Original strand, 19417738 - 19417836
Alignment:
Q  289 tttagttatccatgatatgcataactaacataagagacatcatagatgttggagaagcatcaacaaacttgattccaagcttccttgccctccaatggt 387  Q
    |||||||| |||| | ||| |||||||| ||||||||  | |||||||||||||| |||||||||| ||||| |||||||||  | ||||| |||||||    
T  19417738 tttagttacccataagatgtataactaatataagagagttgatagatgttggagatgcatcaacaagcttgaatccaagcttattagcccttcaatggt 19417836  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 333 - 388
Target Start/End: Original strand, 29020804 - 29020859
Alignment:
Q  333 gatgttggagaagcatcaacaaacttgattccaagcttccttgccctccaatggtg 388  Q
    |||||| ||||||||| ||||| ||||  |||||||||||| ||||||||||||||    
T  29020804 gatgtttgagaagcatgaacaagcttgtctccaagcttcctagccctccaatggtg 29020859  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 294 - 359
Target Start/End: Original strand, 27129079 - 27129144
Alignment:
Q  294 ttatccatgatatgcataactaacataagagacatcatagatgttggagaagcatcaacaaacttg 359  Q
    |||||||||| | |||||||||||| || |||  | ||||||||||  ||||||||||||||||||    
T  27129079 ttatccatgagaagcataactaacacaaaagagttgatagatgttgaggaagcatcaacaaacttg 27129144  T

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Target: chr4 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 289 - 378
Target Start/End: Complemental strand, 10583696 - 10583607
Alignment:
Q  289 tttagttatccatgatatgcataactaacataagagacatcatagatgttggagaagcatcaacaaacttgattccaagcttccttgccc 378  Q
    ||||| || |||||||||||||||||||||||||| |  | |||||| |||||||||||||| ||| |||||||||||||||||| ||||    
T  10583696 tttagatacccatgatatgcataactaacataagatagttgatagatattggagaagcatcaccaagcttgattccaagcttcctagccc 10583607  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 449 - 588
Target Start/End: Complemental strand, 10583527 - 10583387
Alignment:
Q  449 gaaatgacatacacctttatttatacaggttcttaaatgttaacttctctaagaaaagtaaggcccgcctagccaactgaagtttcttctgtcga-ggaa 547  Q
    |||||||| |||||||||||||||| ||||| | ||||||||| ||| ||| | ||| ||||||   |||||| ||  || ||||||||| | || ||||    
T  10583527 gaaatgacgtacacctttatttatagaggttttgaaatgttaagttcactatgcaaaataaggctttcctagcaaatcgaggtttcttctttggagggaa 10583428  T
Q  548 aaacaagttgtcttcaaatatttccttgaaccaccttagtt 588  Q
    |||| |||||||||   |||||| || ||||||| ||||||    
T  10583427 aaaccagttgtcttatgatattttctggaaccacgttagtt 10583387  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 265 - 384
Target Start/End: Original strand, 15583100 - 15583220
Alignment:
Q  265 catctaatcccaacacaaa-gagattttagttatccatgatatgcataactaacataagagacatcatagatgttggagaagcatcaacaaacttgattc 363  Q
    ||||||||| ||||||||| |||| |||||||| | |||| ||| |||||||||| ||||    | |||||||||||| ||||||||||||  | || ||    
T  15583100 catctaatctcaacacaaaagagagtttagttaccaatgaaatgtataactaacaaaagaaggttgatagatgttggataagcatcaacaagttggaatc 15583199  T
Q  364 caagcttccttgccctccaat 384  Q
    |||||||||| ||||||||||    
T  15583200 caagcttcctagccctccaat 15583220  T

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Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 298 - 392
Target Start/End: Original strand, 20618151 - 20618244
Alignment:
Q  298 ccatgatatgcataactaacataagagacatcatagatgttggagaagcatcaacaaacttgattccaagcttccttgccctccaatggtgactc 392  Q
    |||||||||||||||||||||| |||||  | |||||||||||||||||||   |||  |||||||||| |||||| ||||| ||||| ||||||    
T  20618151 ccatgatatgcataactaacat-agagagttgatagatgttggagaagcattgccaatattgattccaatcttcctagcccttcaatgatgactc 20618244  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 544 - 637
Target Start/End: Original strand, 12830986 - 12831079
Alignment:
Q  544 ggaaaaacaagttgtcttcaaatatttccttgaaccaccttagttcacctagaggaccaaatctcgcctagcaaaccgactttggcttttcctt 637  Q
    |||||||| ||||| ||||| |||||| ||||||||   ||||||| | ||  ||||||||||||||||||| ||  | || ||||||||||||    
T  12830986 ggaaaaaccagttgacttcagatattttcttgaaccgatttagttctcttaacggaccaaatctcgcctagcgaaatgtctctggcttttcctt 12831079  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 281 - 388
Target Start/End: Original strand, 18222032 - 18222139
Alignment:
Q  281 aaagagattttagttatccatgatatgcataactaacataagagacat-catagatgttggagaagcatcaacaaacttgattccaagcttccttgccct 379  Q
    ||||||| |||||||| |||||  || ||||||||||| |||| |||| ||||||||||||||||||||||| |  ||||| | |||||||| |  ||||    
T  18222032 aaagagagtttagttacccatggaattcataactaacaaaaga-acattcatagatgttggagaagcatcaatatgcttgaatacaagcttcatatccct 18222130  T
Q  380 ccaatggtg 388  Q
    || ||||||    
T  18222131 cctatggtg 18222139  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 555 - 690
Target Start/End: Original strand, 24967968 - 24968105
Alignment:
Q  555 ttgtcttcaaatatttccttgaaccaccttagttcacctagaggaccaaatctcgcctagcaaaccgactttggcttttccttcaagaa--ctccgtttt 652  Q
    ||||||||| |||||| |||||||| | ||||||| | |||| || ||||||| | ||| | || || ||||||||||| |||| | ||  |||  ||||    
T  24967968 ttgtcttcatatattttcttgaaccgcattagttcgcttagaagatcaaatctagtctaacgaaacgcctttggctttttcttctaaaactctctatttt 24968067  T
Q  653 ggctcccattcacctagctcagctcgccaagtgaatca 690  Q
    |||||  |||||||| |||||||||||| || ||||||    
T  24968068 ggctcttattcacctcgctcagctcgcctagcgaatca 24968105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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