View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21205_high_25 (Length: 360)
Name: NF21205_high_25
Description: NF21205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21205_high_25 |
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Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 123 - 351
Target Start/End: Original strand, 40952610 - 40952842
Alignment:
| Q |
123 |
gcatccatatttgtatcaaccttctccaccagagtaaggacgagggatgtccatttttccatagaagcaagattttcttcaaattttgacaattatcttc |
222 |
Q |
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| T |
40952610 |
gcatccatatttgtatcaaccttctccaccagagtaaggacgagggatgtccatttttccatagaagcaagattttcttcaaattttgacaattatcttc |
40952709 |
T |
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| Q |
223 |
tacatcagaatcaaattaggtgaagactttcatataccaagaatagtttatgaaatattatccattaatctgtttct----ctaacaactgcaccatggt |
318 |
Q |
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| T |
40952710 |
tacatcagaatcaaattaggtgaagactttcatataccaagaatagtttatgaaatattatccattaatctgtttctctagctaacaactgcaccatggt |
40952809 |
T |
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| Q |
319 |
tttttatttattcttcttaactgcgcaatatta |
351 |
Q |
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| T |
40952810 |
tttttatttattcttcttaactgcgcaatatta |
40952842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 40952541 - 40952608
Alignment:
| Q |
18 |
caatctgtcccattttaaattttaaataccaaactgtcctagtttgggtttgcccttgaagttcggtt |
85 |
Q |
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| T |
40952541 |
caatctgtcccattttaaattttaaataccaaactgtcctaggttgggtttgcccttgaagttcggtt |
40952608 |
T |
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