View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21205_high_26 (Length: 358)
Name: NF21205_high_26
Description: NF21205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21205_high_26 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 10 - 340
Target Start/End: Original strand, 10313975 - 10314305
Alignment:
| Q |
10 |
aagaaaataaagatatttgaccttaatgctatttcaagtgattctacagacattcagtaccccgttgtcgagatgtcaaacaaatcaaagctcagttgtg |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10313975 |
aagaaaataaagatatttgaccttaatgctatttcaagtgattctacagacattcagtaccccgttgtcgagatgtcaaacaaatcaaagctcagttgtg |
10314074 |
T |
|
| Q |
110 |
tgtgctggaacagttatataaaaaaccatctggcatctactgattatgatggtgtggttcaggtgtgtatttgtaacacttgcaacatttacattacatt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
10314075 |
tgtgctggaacagttatataaaaaaccatctggcatctactgattatgatggtgtggttcaggtgtgtatttgtaatacttgcaacatttacattacatt |
10314174 |
T |
|
| Q |
210 |
tgatgaaaactaagatatcattgctttttcttctgattgtttctatgttttcattaacattaatgttatgtgacatggttggattcagatgtgggatgca |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10314175 |
tgatgaaaactaagatatcattgctttttcttctgattgtttctatgttttcattaacattaatgttatgtgacatggttggattcagatgtgggatgca |
10314274 |
T |
|
| Q |
310 |
ggcactggtcagccactgtctcaatacatgg |
340 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
10314275 |
ggcactggtcagccactgtctcaatacatgg |
10314305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University