View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21205_high_27 (Length: 351)
Name: NF21205_high_27
Description: NF21205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21205_high_27 |
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Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 19 - 341
Target Start/End: Complemental strand, 44242943 - 44242616
Alignment:
| Q |
19 |
aattgacattgagaaatgagaaccagcttctggaaggaatatcttgtgcttatctaagtcaagtttcttcagagggaaaattagcacaacaacacagatc |
118 |
Q |
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| T |
44242943 |
aattgacattgagaaatgagaaccagcttctggaaggaatatcttgtgcttatctaagtcaagtttcttcagagggaaaattagcacaacaacacagatc |
44242844 |
T |
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| Q |
119 |
aaacgtcactgttatg-----gcttgaatatttaaggtttaatcacnnnnnnnaaaacatttgagtaattcaagggattgtgataatgatgatgacacgg |
213 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44242843 |
aaacgtcactgttatgttatggcttgaatatttaaggtttaatcactttttttaaaacatttgagtaattcaagggattgtgataatgatgatgacacgg |
44242744 |
T |
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| Q |
214 |
acccagagtgaaggttcttccttattaatgtcggtaagggacagagattttggtaaaagcaaggtaccctacacttatctcatccgaaagtagtgcaaat |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
44242743 |
acccagagtgaaggttcttccttattaatgtcggtaagggacagagattttggtaaaagcaaggtaccctacacttacctcatccgaaagtagtgcaaat |
44242644 |
T |
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| Q |
314 |
atgaaaaaagaaaaggacaagttctgtg |
341 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
44242643 |
atgaaaaaagaaaaggacaagttctgtg |
44242616 |
T |
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