View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21205_high_28 (Length: 351)
Name: NF21205_high_28
Description: NF21205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21205_high_28 |
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Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 84 - 336
Target Start/End: Original strand, 47812493 - 47812743
Alignment:
| Q |
84 |
ccacaaaaataaaatagtatcattgtctcataatatttttgttttgatatgaaaaccgtactgtttattggaccacacatgatctatatatattcaccac |
183 |
Q |
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| T |
47812493 |
ccacaaaaataaaatagtatcattgtctcataatatttttgttttgatatgaaaagcgaactgtttattggaccaca--tgatctatatatattcaccac |
47812590 |
T |
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| Q |
184 |
tatagtacgtaagtaataaagaagcagaaactacatggaaagagcttaagccaccaaatttgtacaaagagaagtagaaacacatcattgtgtagtggaa |
283 |
Q |
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| T |
47812591 |
tatagtacgtaagtaataaagaagcagaaactacatggaaagagcttgatccaccaaatttgtacaaagagaagtagaaacacatcattgtgtagtggaa |
47812690 |
T |
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| Q |
284 |
actatggcaaaaaacccttgttgtgaaaggatgggaatgaggaaaggaccatg |
336 |
Q |
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| T |
47812691 |
actatggcaaaaaacccttgttgtgaaaggatgggaatgaggaaaggaccatg |
47812743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 2 - 84
Target Start/End: Complemental strand, 47811781 - 47811699
Alignment:
| Q |
2 |
atcgactctccgatcattgttgggacattaaaagagttgggagctatcatcacattaaactatctaataagagaatttgacac |
84 |
Q |
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| T |
47811781 |
atcgactctcctatcattgttgggacattaaaagagttggaagctatcatcacattaaactatctaataagagaacttgacac |
47811699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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