View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21205_high_35 (Length: 289)
Name: NF21205_high_35
Description: NF21205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21205_high_35 |
 | |
|
| [»] scaffold0400 (2 HSPs) |
| | |
|
| [»] scaffold0365 (2 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 12)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 20 - 279
Target Start/End: Original strand, 15010803 - 15011062
Alignment:
| Q |
20 |
gcatcaactaactgcattggagcttgcaataaataatttgagtggcttcatccctaaaaaacttggtatgctgtctatgttattgcagttgaatttgagc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
15010803 |
gcatcaactaactgcattggagcttgcaataaataatttgagtggcttcatccctaaaaaacttggtatgttgtctatgttattgcagttaaatttgagc |
15010902 |
T |
|
| Q |
120 |
caaaataagtttaaggggaacattcctgttgagtttggccaattgaatgttattgaaaaccttgatcttagtgggaattctatgaatggaaccataccag |
219 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15010903 |
caaaataagtttgaggggaacattcctgttgagtttggccaattgaatgttattgaaaatcttgatcttagtgggaattctatgaatggaaccataccag |
15011002 |
T |
|
| Q |
220 |
caatgcttggccagttaaatcacttagaaacattgaatctctcacataacaatctctctg |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15011003 |
caatgcttggccagttaaatcacttagaaacattgaatctctcacataacaatctctctg |
15011062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 20 - 279
Target Start/End: Original strand, 15001910 - 15002169
Alignment:
| Q |
20 |
gcatcaactaactgcattggagcttgcaataaataatttgagtggcttcatccctaaaaaacttggtatgctgtctatgttattgcagttgaatttgagc |
119 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
15001910 |
gcatcaactaactgcattggagcttgcaacaaataatttgagtggattcatccctgaaaaacttggtatgttgtctatgttattgcagttaaatttgagc |
15002009 |
T |
|
| Q |
120 |
caaaataagtttaaggggaacattcctgttgagtttggccaattgaatgttattgaaaaccttgatcttagtgggaattctatgaatggaaccataccag |
219 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15002010 |
caaaataagtttgaggggaacattcctgttgagtttggccaattgaatgttattgaaaaccttgatcttagtgggaattctatgaatggaaccataccag |
15002109 |
T |
|
| Q |
220 |
caatgcttggccagttaaatcacttagaaacattgaatctctcacataacaatctctctg |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15002110 |
caatgcttggccagttaaatcacttagaaacattgaatctctcacataacaatctctctg |
15002169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 20 - 279
Target Start/End: Original strand, 15036823 - 15037082
Alignment:
| Q |
20 |
gcatcaactaactgcattggagcttgcaataaataatttgagtggcttcatccctaaaaaacttggtatgctgtctatgttattgcagttgaatttgagc |
119 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| || ||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
15036823 |
gcatcaactaactgcattggagcttgcaacaaataacttaagtggcttcatcctggaaaaacttggtatgttgtctaggttattgcagttgaatttgagc |
15036922 |
T |
|
| Q |
120 |
caaaataagtttaaggggaacattcctgttgagtttggccaattgaatgttattgaaaaccttgatcttagtgggaattctatgaatggaaccataccag |
219 |
Q |
| |
|
|| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15036923 |
cataataagcttgaggggaacattcctgttgagtttggccaattgaatgttattgaaaaccttgatcttagtgggaattctatgaatggaaccataccag |
15037022 |
T |
|
| Q |
220 |
caatgcttggccagttaaatcacttagaaacattgaatctctcacataacaatctctctg |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15037023 |
caatgcttggccagttaaatcacttagaaacattgaatctctcacataacaatctctctg |
15037082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 28 - 279
Target Start/End: Original strand, 15016926 - 15017177
Alignment:
| Q |
28 |
taactgcattggagcttgcaataaataatttgagtggcttcatccctaaaaaacttggtatgctgtctatgttattgcagttgaatttgagccaaaataa |
127 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||| |||||| ||||||| |||| ||||||||||||||||| |
|
|
| T |
15016926 |
taactgcattggagcttgcagcaaataatttcagtggcttcatccctgaaaaacttggtatgttgtctaggttattgaagttaaatttgagccaaaataa |
15017025 |
T |
|
| Q |
128 |
gtttaaggggaacattcctgttgagtttggccaattgaatgttattgaaaaccttgatcttagtgggaattctatgaatggaaccataccagcaatgctt |
227 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15017026 |
gtttgaggggaacattcctgttgagtttggccaattgaatgttattgaaaatcttgatcttagtgggaattctatgaatggaaccataccagcaatgctt |
15017125 |
T |
|
| Q |
228 |
ggccagttaaatcacttagaaacattgaatctctcacataacaatctctctg |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15017126 |
ggccagttaaatcacttagaaacattgaatctctcacataacaatctctctg |
15017177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 27 - 279
Target Start/End: Original strand, 15024927 - 15025179
Alignment:
| Q |
27 |
ctaactgcattggagcttgcaataaataatttgagtggcttcatccctaaaaaacttggtatgctgtctatgttattgcagttgaatttgagccaaaata |
126 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| | | |||| |||||||||||| |||||||||||||||| |
|
|
| T |
15024927 |
ctaactgcattggagcttgcaacaaataatttgagtggcttcatccctaaaagacttggtaggttatctaggttattgcagttaaatttgagccaaaata |
15025026 |
T |
|
| Q |
127 |
agtttaaggggaacattcctgttgagtttggccaattgaatgttattgaaaaccttgatcttagtgggaattctatgaatggaaccataccagcaatgct |
226 |
Q |
| |
|
||||| ||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
15025027 |
agtttgaggggaacattcctgctgagtttgcccaattgaatgttattgaaaatcttgatcttagtgggaattttatgaatggaaccataccatcaatgct |
15025126 |
T |
|
| Q |
227 |
tggccagttaaatcacttagaaacattgaatctctcacataacaatctctctg |
279 |
Q |
| |
|
||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15025127 |
tgggcagttaaatcgcttagaaacattgaatctctcacataacaatctctctg |
15025179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 27 - 279
Target Start/End: Original strand, 15032268 - 15032520
Alignment:
| Q |
27 |
ctaactgcattggagcttgcaataaataatttgagtggcttcatccctaaaaaacttggtatgctgtctatgttattgcagttgaatttgagccaaaata |
126 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| | | |||| |||||||||||| |||||||||||||||| |
|
|
| T |
15032268 |
ctaactgcattggagcttgcaacaaataatttgagtggcttcatccctaaaagacttggtaggttatctaggttattgcagttaaatttgagccaaaata |
15032367 |
T |
|
| Q |
127 |
agtttaaggggaacattcctgttgagtttggccaattgaatgttattgaaaaccttgatcttagtgggaattctatgaatggaaccataccagcaatgct |
226 |
Q |
| |
|
||||| ||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
15032368 |
agtttgaggggaacattcctgctgagtttgcccaattgaatgttattgaaaatcttgatcttagtgggaattttatgaatggaaccataccatcaatgct |
15032467 |
T |
|
| Q |
227 |
tggccagttaaatcacttagaaacattgaatctctcacataacaatctctctg |
279 |
Q |
| |
|
||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15032468 |
tgggcagttaaatcgcttagaaacattgaatctctcacataacaatctctctg |
15032520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 20 - 276
Target Start/End: Complemental strand, 14522933 - 14522677
Alignment:
| Q |
20 |
gcatcaactaactgcattggagcttgcaataaataatttgagtggcttcatccctaaaaaacttggtatgctgtctatgttattgcagttgaatttgagc |
119 |
Q |
| |
|
|||| |||||||| ||||||| ||||||| ||||||||| ||||| || |||||| |||||||||| | | |||||| |||||||||||||||||||||| |
|
|
| T |
14522933 |
gcatgaactaactacattggatcttgcaacaaataatttaagtggttttatccctgaaaaacttggaaggttgtctaggttattgcagttgaatttgagc |
14522834 |
T |
|
| Q |
120 |
caaaataagtttaaggggaacattcctgttgagtttggccaattgaatgttattgaaaaccttgatcttagtgggaattctatgaatggaaccataccag |
219 |
Q |
| |
|
|||||||||||| | || |||||||||||||| |||| |||||||||||||||||| | ||||||||||| ||||||| | ||||||||||||||||| |
|
|
| T |
14522833 |
caaaataagtttgaaggaaacattcctgttgaacttggtcaattgaatgttattgaagatcttgatcttagcgggaattttttgaatggaaccataccaa |
14522734 |
T |
|
| Q |
220 |
caatgcttggccagttaaatcacttagaaacattgaatctctcacataacaatctct |
276 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
14522733 |
caatgcttggacagttaaatcgcttagaaacattgaatctctcacataataatctct |
14522677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 26 - 279
Target Start/End: Complemental strand, 14533048 - 14532795
Alignment:
| Q |
26 |
actaactgcattggagcttgcaataaataatttgagtggcttcatccctaaaaaacttggtatgctgtctatgttattgcagttgaatttgagccaaaat |
125 |
Q |
| |
|
||||||||| |||||||||| || ||||||||| |||||||||||||||| || |||||| | | ||||| |||| | || |||||||||||||||||| |
|
|
| T |
14533048 |
actaactgccttggagcttgaaaaaaataatttaagtggcttcatccctagaagacttggaaggttgtctgagttaatacatttgaatttgagccaaaat |
14532949 |
T |
|
| Q |
126 |
aagtttaaggggaacattcctgttgagtttggccaattgaatgttattgaaaaccttgatcttagtgggaattctatgaatggaaccataccagcaatgc |
225 |
Q |
| |
|
||||| | || ||||||||||||||||||| |||||| || ||||||||| | ||||||||||||| ||| ||||| ||||||||||||| |||||| |
|
|
| T |
14532948 |
aagttcgaaggaaacattcctgttgagtttgaccaattaaaggttattgaagatcttgatcttagtgaaaatgttatgagtggaaccataccatcaatgc |
14532849 |
T |
|
| Q |
226 |
ttggccagttaaatcacttagaaacattgaatctctcacataacaatctctctg |
279 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||| |||||||| ||||| |||| |
|
|
| T |
14532848 |
ttggacagttaaatcacttacaaacattgaatctttcacataataatctttctg |
14532795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 26 - 279
Target Start/End: Original strand, 14503791 - 14504044
Alignment:
| Q |
26 |
actaactgcattggagcttgcaataaataatttgagtggcttcatccctaaaaaacttggtatgctgtctatgttattgcagttgaatttgagccaaaat |
125 |
Q |
| |
|
||||||| | ||||||||||||| ||||||||| |||||||||||||||| || |||||| | | ||||| |||| | || |||||||||||||||||| |
|
|
| T |
14503791 |
actaactaccttggagcttgcaacaaataatttaagtggcttcatccctagaagacttggaaggttgtctgagttaatacatttgaatttgagccaaaat |
14503890 |
T |
|
| Q |
126 |
aagtttaaggggaacattcctgttgagtttggccaattgaatgttattgaaaaccttgatcttagtgggaattctatgaatggaaccataccagcaatgc |
225 |
Q |
| |
|
|||||| | || |||||||| ||||||||||||| ||| |||||||||||| | |||||||| ||||| |||| |||||||||||| ||||| ||||| |
|
|
| T |
14503891 |
aagtttgaaggaaacattcccgttgagtttggccgattaaatgttattgaagatcttgatctcagtggaaattttatgaatggaacgataccttcaatgt |
14503990 |
T |
|
| Q |
226 |
ttggccagttaaatcacttagaaacattgaatctctcacataacaatctctctg |
279 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
14503991 |
ttggagtgttaaatcatttagaaacattgaatctctcacataataatctgtctg |
14504044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 36 - 259
Target Start/End: Original strand, 15040578 - 15040801
Alignment:
| Q |
36 |
ttggagcttgcaataaataatttgagtggcttcatccctaaaaaacttggtatgctgtctatgttattgcagttgaatttgagccaaaataagtttaagg |
135 |
Q |
| |
|
|||||||| |||| ||||||||| ||||||||| |||| ||| ||||||| | | ||||||||||| || || ||| ||||||||||||||||| | | |
|
|
| T |
15040578 |
ttggagctggcaacaaataatttaagtggcttcgtcccaaaacaacttggaagattatctatgttattacacttaaatatgagccaaaataagtttgaag |
15040677 |
T |
|
| Q |
136 |
ggaacattcctgttgagtttggccaattgaatgttattgaaaaccttgatcttagtgggaattctatgaatggaaccataccagcaatgcttggccagtt |
235 |
Q |
| |
|
| |||||||||| |||| |||| || || || ||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||| |
|
|
| T |
15040678 |
gaaacattcctgatgagattggacagttaaaagttattgaaaatcttgatcttagtgggaattctttgaatggaaccataccaacaatgcttggacagtt |
15040777 |
T |
|
| Q |
236 |
aaatcacttagaaacattgaatct |
259 |
Q |
| |
|
||||| |||||||||||||||||| |
|
|
| T |
15040778 |
aaatcgcttagaaacattgaatct |
15040801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 36 - 279
Target Start/End: Original strand, 14467622 - 14467865
Alignment:
| Q |
36 |
ttggagcttgcaataaataatttgagtggcttcatccctaaaaaacttggtatgctgtctatgttattgcagttgaatttgagccaaaataagtttaagg |
135 |
Q |
| |
|
||||||||| ||| ||||||||| ||||| | ||||| ||| ||||||| | |||| |||||||| || |||||||| ||| |||||| |||| | | |
|
|
| T |
14467622 |
ttggagctttcaacaaataatttaagtggttcaatcccaaaacaacttggaagtttgtcaatgttattacacttgaatttaagcaaaaatatgtttgaag |
14467721 |
T |
|
| Q |
136 |
ggaacattcctgttgagtttggccaattgaatgttattgaaaaccttgatcttagtgggaattctatgaatggaaccataccagcaatgcttggccagtt |
235 |
Q |
| |
|
| ||||||||||| |||||||||||||| |||||| ||||| | ||||||||||||| ||||| | |||| |||||||| ||||||||| |||| ||||| |
|
|
| T |
14467722 |
gaaacattcctgtcgagtttggccaattaaatgttcttgaagatcttgatcttagtgagaattttttgaacggaaccattccagcaatgtttggacagtt |
14467821 |
T |
|
| Q |
236 |
aaatcacttagaaacattgaatctctcacataacaatctctctg |
279 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
14467822 |
aaatcacttagaaacattgaatctctcacataataatctttctg |
14467865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 91 - 279
Target Start/End: Original strand, 14481859 - 14482047
Alignment:
| Q |
91 |
tgtctatgttattgcagttgaatttgagccaaaataagtttaaggggaacattcctgttgagtttggccaattgaatgttattgaaaaccttgatcttag |
190 |
Q |
| |
|
|||| |||||||| || |||||||| ||| |||||| |||| | || ||||||||||| |||||||||||||| |||||| ||||| | ||||||||||| |
|
|
| T |
14481859 |
tgtcaatgttattacacttgaatttaagcaaaaatatgtttgaaggaaacattcctgtcgagtttggccaattaaatgttcttgaagatcttgatcttag |
14481958 |
T |
|
| Q |
191 |
tgggaattctatgaatggaaccataccagcaatgcttggccagttaaatcacttagaaacattgaatctctcacataacaatctctctg |
279 |
Q |
| |
|
|| ||||| | |||| |||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
14481959 |
tgagaattttttgaacggaaccattccagcaatgtttggacagttaaatcacttagaaacattgaatctctcacataataatctttctg |
14482047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: scaffold0400
Description:
Target: scaffold0400; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 26 - 279
Target Start/End: Original strand, 12588 - 12841
Alignment:
| Q |
26 |
actaactgcattggagcttgcaataaataatttgagtggcttcatccctaaaaaacttggtatgctgtctatgttattgcagttgaatttgagccaaaat |
125 |
Q |
| |
|
||||||||| |||||||||| || ||||||||| |||||||||||||||| || |||||| | | ||||| |||| | || |||||||||||||||||| |
|
|
| T |
12588 |
actaactgccttggagcttgaaaaaaataatttaagtggcttcatccctagaagacttggaaggttgtctgagttaatacatttgaatttgagccaaaat |
12687 |
T |
|
| Q |
126 |
aagtttaaggggaacattcctgttgagtttggccaattgaatgttattgaaaaccttgatcttagtgggaattctatgaatggaaccataccagcaatgc |
225 |
Q |
| |
|
| |||| | || |||||||| |||||||||||||||| | ||||||||| | ||||| |||||||| |||| | |||| |||||||||||| |||||| |
|
|
| T |
12688 |
aggtttgaaggaaacattcccattgagtttggccaattagaagttattgaagatcttgaccttagtggaaattttttgaacggaaccataccatcaatgc |
12787 |
T |
|
| Q |
226 |
ttggccagttaaatcacttagaaacattgaatctctcacataacaatctctctg |
279 |
Q |
| |
|
|||| |||||||||||| || ||||||||||||| |||||||| ||||| |||| |
|
|
| T |
12788 |
ttggacagttaaatcacatacaaacattgaatctttcacataataatctttctg |
12841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 36 - 268
Target Start/End: Original strand, 6310 - 6542
Alignment:
| Q |
36 |
ttggagcttgcaataaataatttgagtggcttcatccctaaaaaacttggtatgctgtctatgttattgcagttgaatttgagccaaaataagtttaagg |
135 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||| || ||||||| | | ||| |||||| | |||||||||||||||||||||||| | | |
|
|
| T |
6310 |
ttggagcttgcaacaaataatttcagtggcttcatcccagaacaacttggaagattacctaatttattggacttgaatttgagccaaaataagtttgaag |
6409 |
T |
|
| Q |
136 |
ggaacattcctgttgagtttggccaattgaatgttattgaaaaccttgatcttagtgggaattctatgaatggaaccataccagcaatgcttggccagtt |
235 |
Q |
| |
|
| ||||||||| ||||||||| |||||||| |||||||||| ||||||||||| | |||| | ||||||||||||||||| |||||||||| |||| |
|
|
| T |
6410 |
gagacattcctgctgagtttggacaattgaaaattattgaaaatcttgatcttagcgagaatgttttgaatggaaccataccaacaatgcttggagagtt |
6509 |
T |
|
| Q |
236 |
aaatcacttagaaacattgaatctctcacataa |
268 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |
|
|
| T |
6510 |
aaatcgcttagaaacattgaatctctcacataa |
6542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: scaffold0365
Description:
Target: scaffold0365; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 26 - 279
Target Start/End: Original strand, 13231 - 13484
Alignment:
| Q |
26 |
actaactgcattggagcttgcaataaataatttgagtggcttcatccctaaaaaacttggtatgctgtctatgttattgcagttgaatttgagccaaaat |
125 |
Q |
| |
|
||||||||| |||||||||| || ||||||||| |||||||||||||||| || |||||| | | ||||| |||| | || |||||||||||||||||| |
|
|
| T |
13231 |
actaactgccttggagcttgaaaaaaataatttaagtggcttcatccctagaagacttggaaggttgtctgagttaatacatttgaatttgagccaaaat |
13330 |
T |
|
| Q |
126 |
aagtttaaggggaacattcctgttgagtttggccaattgaatgttattgaaaaccttgatcttagtgggaattctatgaatggaaccataccagcaatgc |
225 |
Q |
| |
|
| |||| | || |||||||| |||||||||||||||| | ||||||||| | ||||| |||||||| |||| | |||| |||||||||||| |||||| |
|
|
| T |
13331 |
aggtttgaaggaaacattcccattgagtttggccaattagaagttattgaagatcttgaccttagtggaaattttttgaacggaaccataccatcaatgc |
13430 |
T |
|
| Q |
226 |
ttggccagttaaatcacttagaaacattgaatctctcacataacaatctctctg |
279 |
Q |
| |
|
|||| |||||||||||| || ||||||||||||| |||||||| ||||| |||| |
|
|
| T |
13431 |
ttggacagttaaatcacatacaaacattgaatctttcacataataatctttctg |
13484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 36 - 268
Target Start/End: Original strand, 6954 - 7186
Alignment:
| Q |
36 |
ttggagcttgcaataaataatttgagtggcttcatccctaaaaaacttggtatgctgtctatgttattgcagttgaatttgagccaaaataagtttaagg |
135 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||| || ||||||| | | ||| |||||| | |||||||||||||||||||||||| | | |
|
|
| T |
6954 |
ttggagcttgcaacaaataatttcagtggcttcatcccagaacaacttggaagattacctaatttattggacttgaatttgagccaaaataagtttgaag |
7053 |
T |
|
| Q |
136 |
ggaacattcctgttgagtttggccaattgaatgttattgaaaaccttgatcttagtgggaattctatgaatggaaccataccagcaatgcttggccagtt |
235 |
Q |
| |
|
| ||||||||| ||||||||| |||||||| |||||||||| ||||||||||| | |||| | ||||||||||||||||| |||||||||| |||| |
|
|
| T |
7054 |
gagacattcctgctgagtttggacaattgaaaattattgaaaatcttgatcttagcgagaatgttttgaatggaaccataccaacaatgcttggagagtt |
7153 |
T |
|
| Q |
236 |
aaatcacttagaaacattgaatctctcacataa |
268 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |
|
|
| T |
7154 |
aaatcgcttagaaacattgaatctctcacataa |
7186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 141 - 279
Target Start/End: Original strand, 14605822 - 14605960
Alignment:
| Q |
141 |
attcctgttgagtttggccaattgaatgttattgaaaaccttgatcttagtgggaattctatgaatggaaccataccagcaatgcttggccagttaaatc |
240 |
Q |
| |
|
|||||| |||| ||||| ||||| ||||| |||||| ||| ||||| ||||| |||| | || ||||||| |||||| |||||||| ||||| || |
|
|
| T |
14605822 |
attcctattgaatttggacaatttaatgtccttgaaatcctagatctcagtggaaattttttggatggaacaataccatcaatgcttacacagttgaaat |
14605921 |
T |
|
| Q |
241 |
acttagaaacattgaatctctcacataacaatctctctg |
279 |
Q |
| |
|
|||| |||||||||||| |||||||||| ||||| |||| |
|
|
| T |
14605922 |
acttggaaacattgaatatctcacataataatctttctg |
14605960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 141 - 279
Target Start/End: Original strand, 16024999 - 16025137
Alignment:
| Q |
141 |
attcctgttgagtttggccaattgaatgttattgaaaaccttgatcttagtgggaattctatgaatggaaccataccagcaatgcttggccagttaaatc |
240 |
Q |
| |
|
|||||| |||| ||||| ||||| ||||| |||||| ||| ||||| ||||| |||| | || ||||||| |||||| |||||||| ||||| || |
|
|
| T |
16024999 |
attcctattgaatttggacaatttaatgtccttgaaatcctagatctcagtggaaattttttggatggaacaataccatcaatgcttacacagttgaaat |
16025098 |
T |
|
| Q |
241 |
acttagaaacattgaatctctcacataacaatctctctg |
279 |
Q |
| |
|
|||| |||||||||||| |||||||||| ||||| |||| |
|
|
| T |
16025099 |
acttggaaacattgaatatctcacataataatctttctg |
16025137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 198
Target Start/End: Original strand, 17848423 - 17848512
Alignment:
| Q |
109 |
tgaatttgagccaaaataagtttaaggggaacattcctgttgagtttggccaattgaatgttattgaaaaccttgatcttagtgggaatt |
198 |
Q |
| |
|
||||||||||||| || || ||||| || || ||||||||||||||||||||||| || || || ||| ||||||||||||||||||| |
|
|
| T |
17848423 |
tgaatttgagccataacaaatttaaaggaaatattcctgttgagtttggccaatttaaagtccttcaaagtcttgatcttagtgggaatt |
17848512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 279
Target Start/End: Original strand, 16172519 - 16172619
Alignment:
| Q |
179 |
ccttgatcttagtgggaattctatgaatggaaccataccagcaatgcttggccagttaaatcacttagaaacattgaatctctcacataacaatctctct |
278 |
Q |
| |
|
||||||||| ||||| |||| | | |||||||| |||||| |||||||| ||||| || |||| |||||||||||| |||||||||| ||||| ||| |
|
|
| T |
16172519 |
ccttgatctgagtggaaattttttaaatggaacaataccatcaatgcttacacagttgaaatacttggaaacattgaatatctcacataataatctttct |
16172618 |
T |
|
| Q |
279 |
g |
279 |
Q |
| |
|
| |
|
|
| T |
16172619 |
g |
16172619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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