View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21205_high_4 (Length: 683)

Name: NF21205_high_4
Description: NF21205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21205_high_4
NF21205_high_4
[»] chr8 (1 HSPs)
chr8 (16-673)||(41094014-41094672)


Alignment Details
Target: chr8 (Bit Score: 618; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 618; E-Value: 0
Query Start/End: Original strand, 16 - 673
Target Start/End: Complemental strand, 41094672 - 41094014
Alignment:
Q  16 gaaacttctactcagattgtattatttagatgtttgtgtaatatttcaaaaaacaatactataaactgatttactcattgagtgcatgataaaaattgta 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41094672 gaaacttctactcagattgtattatttagatgtttgtgtaatatttcaaaaaacaatactataaactgatttactcattgagtgcatgataaaaattgta 41094573  T
Q  116 atacaaaataatacaagcttccatttcccataacacaaaagtcacattacatgtaacaatacatatatatagattaatttcagcaaaagagnnnnnnn-g 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||        |    
T  41094572 atacaaaataatacaagcttccatttcccataacacaaaagtcacattacatgtaacaatacatacatatagattaatttcagcaaaagagaaaaaaaag 41094473  T
Q  215 aaatgtaaccttcgccattcgcgtctagcaaagccttcctcttgcatttgagtgggatcaggaagaacaggaccttcagaagagaagattccatcatcag 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41094472 aaatgtaaccttcgccattcgcgtctagcaaagccttcctcttgcatttgagtgggatcaggaagaacaggaccttcagaagagaagattccatcatcag 41094373  T
Q  315 tttcattggtttgaaacggagtaacgaaatcagggttagggttagggcttgaaactccgaatccatatccgggaggagaatgttggtcattgttgatgtt 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41094372 tttcattggtttgaaacggagtaacgaaatcagggttagggttagggcttgaaactccgaatccatatccgggaggagaatgttggtcattgttgatgtt 41094273  T
Q  415 gttgctggtgtcaacggtgaggtgatcgtcgtcgggattatttggaggatggaatgtggatccataatcaaactgctgttgagaattgaatccttcatag 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41094272 gttgctggtgtcaacggtgaggtgatcgtcgtcgggattatttggaggatggaatgtggatccataatcaaactgctgttgagaattgaatccttcatag 41094173  T
Q  515 ttactattattgtcatcttcaaaaggtcctcctactactactcctcctcctccaccagtggttggagattgatgatgtgactgctcttcctcaaacgagt 614  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41094172 ttactattgttgtcatcttcaaaaggtcctcctactactactcctcctcctccaccagtggttggagattgatgatgtgactgctcttcctcaaacgagt 41094073  T
Q  615 ctagagactccatagttgaattaccttagcttcggatcacaattctttccgttcctttg 673  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  41094072 ctagagactccatagttgaattaccttagcttcggatcacaattctttctgttcctttg 41094014  T

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