View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21205_high_50 (Length: 253)
Name: NF21205_high_50
Description: NF21205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21205_high_50 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 18 - 253
Target Start/End: Complemental strand, 6707063 - 6706824
Alignment:
| Q |
18 |
cttaatatgatgtttcttgctgcttcagaaaatatgtttaattacaataaa----attacgtacttggaagttaactttggcactatcaactttgagtaa |
113 |
Q |
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| T |
6707063 |
cttaatatgatatttcttgctgcttcagaaaatatgtttaattacaataaattaaattacgtacttagaagttaactttggcactatcaactttgagtaa |
6706964 |
T |
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| Q |
114 |
gaaaatattgttgaataacatattcatttttgcaagcttaagaaatgtattnnnnnnntcactattaacaacataaattcttagaataatattgaaagat |
213 |
Q |
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| T |
6706963 |
gaaaatattgttcaataacatattcattttttcaagcttaagaaatgtattaaaaaaatcactattggcaacataaattcttagaataatattgaaagat |
6706864 |
T |
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| Q |
214 |
agtatataaatattatatatgtacatacataacataaaat |
253 |
Q |
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| T |
6706863 |
agtatataaatattatatatgtacatacataacataaaat |
6706824 |
T |
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