View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21205_high_53 (Length: 252)
Name: NF21205_high_53
Description: NF21205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21205_high_53 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 14 - 252
Target Start/End: Original strand, 47717677 - 47717915
Alignment:
| Q |
14 |
agaaggaatagatttcatgtctaatattgcaacttggtttgagaactataccgccaaccttgttatgtaaataaataggaatttctgaaatagcacgctc |
113 |
Q |
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| T |
47717677 |
agaaggaatagatttcatgtctaatattgcaacttggtttgagaactataccgccaaccttgttattaaaataaataggaatttctgaaatagcacgctc |
47717776 |
T |
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| Q |
114 |
taaacaatcattgcaatcttgctgtgataaatcaggtgtacactgcacaagaccatatgtggtttcaaaattcaaagttgcattagcggtagcaaactta |
213 |
Q |
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| T |
47717777 |
taaacaatcattgcaatcttgctgtgataaatcaggtgtacactgcacaagaccatatgtggtttcaaaattcaaagttgcattagcggtagcaaactta |
47717876 |
T |
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| Q |
214 |
cgacgagaatcacttgatgctgctatttctttgagtttc |
252 |
Q |
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| T |
47717877 |
cgacgagaatcacttgatgctgctatttctttgagtttc |
47717915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 14 - 252
Target Start/End: Original strand, 47745466 - 47745704
Alignment:
| Q |
14 |
agaaggaatagatttcatgtctaatattgcaacttggtttgagaactataccgccaaccttgttatgtaaataaataggaatttctgaaatagcacgctc |
113 |
Q |
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| T |
47745466 |
agaaggaatatatttcatatctaatattacaacttagtttgagaactctaccaccaatcttgttataaaaaaaacttggagtttctgaaatagcacgctc |
47745565 |
T |
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| Q |
114 |
taaacaatcattgcaatcttgctgtgataaatcaggtgtacactgcacaagaccatatgtggtttcaaaattcaaagttgcattagcggtagcaaactta |
213 |
Q |
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| T |
47745566 |
taaacaatcattgcaatcttgtcctgacaagtcaggtgtacactgcacaagaccatatatggtttcaaaattcaaagttgcattagcggtagcaaactta |
47745665 |
T |
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| Q |
214 |
cgacgagaatcacttgatgctgctatttctttgagtttc |
252 |
Q |
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| T |
47745666 |
cgacgagaatcacctgatgcagctatttcattgagtttc |
47745704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 6 - 252
Target Start/End: Original strand, 47712866 - 47713121
Alignment:
| Q |
6 |
aggagcagagaaggaatagatttcatgtctaatattgcaacttggtttgagaactataccgccaaccttgttatgtaaataaataggaatttctgaaata |
105 |
Q |
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| T |
47712866 |
aggatcagagaagcgatagacttcatatctaatattacaacttggtttgacaactctacaaccaatcttgttataacagtaaattggaatttctgatata |
47712965 |
T |
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| Q |
106 |
gcacgctctaaacaatcattgcaatcttgctgtgataaatcaggtgtacactgcacaagaccatatgtggtttcaaaattcaa---------agttgcat |
196 |
Q |
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| T |
47712966 |
gcaaactctaaacaatcattgcaatcttgctctgacaaatcaggtgtacactgcacaagaccatatatggtttgaaaattcaaattcacatcagttgcat |
47713065 |
T |
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| Q |
197 |
tagcggtagcaaacttacgacgagaatcacttgatgctgctatttctttgagtttc |
252 |
Q |
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| T |
47713066 |
tatccgcagcaaacttaagacgagaatcacttgatgcagctatttctctcagtttc |
47713121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 26 - 252
Target Start/End: Original strand, 47759801 - 47760036
Alignment:
| Q |
26 |
tttcatgtctaatattgcaacttggtttgagaactataccgccaaccttgttatgtaaataaataggaatttctgaaatagcacgctctaaacaatcatt |
125 |
Q |
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| T |
47759801 |
tttcatatctgatattacaacttggtttgagaactctaccaccaatcttgttattacaacaacttggaatatctgagatagcaccatctaaacaattatt |
47759900 |
T |
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| Q |
126 |
gcaatcttgctgtgataaatcaggtgtacactgcacaagaccatatgtggtttcaaaattcaa---------agttgcattagcggtagcaaacttacga |
216 |
Q |
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| T |
47759901 |
gcaatcttgctctgacaaatcaggtgtgcactgaacaagaccatatatggtttgaaaattcaaatttacatcagttgcattatctgtagcaaatttacga |
47760000 |
T |
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| Q |
217 |
cgagaatcacttgatgctgctatttctttgagtttc |
252 |
Q |
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| T |
47760001 |
cgagaatcacttgatgcagctttctctttcagtttc |
47760036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 47704888 - 47704941
Alignment:
| Q |
26 |
tttcatgtctaatattgcaacttggtttgagaactataccgccaaccttgttat |
79 |
Q |
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| T |
47704888 |
tttcatatctaatattgcaacttggtttgataactcttccaccaatcttgttat |
47704941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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