View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21205_high_55 (Length: 251)
Name: NF21205_high_55
Description: NF21205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21205_high_55 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 12703031 - 12703271
Alignment:
| Q |
1 |
tcgactttcatcatcaactgttttatttgctgctaaagcatcaacaggaaccaaattctgcaatggtttgcaaactttggaagcagaatttctatgaagc |
100 |
Q |
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| T |
12703031 |
tcgactttcatcatcaactgttttatttgcttctagagcatcaactggaaccaaattctgcaatggtttgcaaactttggaagcagaatttctatgaagc |
12703130 |
T |
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| Q |
101 |
tg---attgggggtctcaactttcgtgagcggacgatcaattcttctagtttcttgagtgagtgaatctccaattccaacacttgttgaacaagacccaa |
197 |
Q |
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| T |
12703131 |
tgctgattgggggtctcaactttcgtgagcggacgatcaattcttctagtttcttgagtgagtgaatctccaattccaacacttgttgaacaagacccaa |
12703230 |
T |
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| Q |
198 |
attgaaatccttgtttggatttctcaggttcgctatgtttc |
238 |
Q |
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| T |
12703231 |
attgaaatccttgtttggatttctcaggttcgctatgtttc |
12703271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 8206819 - 8206942
Alignment:
| Q |
1 |
tcgactttcatcatcaactgttttatttgctgct---aaagcatcaacaggaaccaaattctgcaatggtttgcaaactttggaagcagaatttctatga |
97 |
Q |
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|||||||||||||||||| || | |||||||||| | ||||||||||||||||| |||| |||||||||| |||||||||| |||||| || | ||| |
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| T |
8206819 |
tcgactttcatcatcaacagtctcatttgctgctgctacagcatcaacaggaaccacattcggcaatggtttacaaactttgggagcagatttcccatgg |
8206918 |
T |
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| Q |
98 |
agctgattgggggtctcaactttc |
121 |
Q |
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| T |
8206919 |
tgctgacttggggtctcagctttc |
8206942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 125 - 238
Target Start/End: Original strand, 8207045 - 8207158
Alignment:
| Q |
125 |
agcggacgatcaattcttctagtttcttgagtgagtgaatctccaattccaacacttgttgaacaagacccaaattgaaatccttgtttggatttctcag |
224 |
Q |
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||||||||||||||||| ||||| ||| ||| || |||||| | | || ||||||| ||||||||||||| |||||| || |||||||||||| ||||| |
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| T |
8207045 |
agcggacgatcaattctgctagtatctcgaggaagcgaatctgctactctaacacttcttgaacaagaccccaattgacatacttgtttggattcctcag |
8207144 |
T |
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| Q |
225 |
gttcgctatgtttc |
238 |
Q |
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|||| | ||||||| |
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| T |
8207145 |
gttcacgatgtttc |
8207158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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