View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21205_high_59 (Length: 249)
Name: NF21205_high_59
Description: NF21205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21205_high_59 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 12 - 216
Target Start/End: Complemental strand, 40838897 - 40838693
Alignment:
| Q |
12 |
acagaattgaatataaatgctgtgaacttttgggaattaaggaaataagaaaatactgcattgaaggctaattgtgttgcacatagtaaagaataggtgg |
111 |
Q |
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| T |
40838897 |
acagaattgaatatgaatgctgtgaacttttgggaattaaggaaataagaaaatactgcattgaaggctaattgtgttgcacatagtaaagaataggtgg |
40838798 |
T |
|
| Q |
112 |
aaagtgaaagatatagaagtccattggaatacatcaaattgtcccctgctaaaagtaagccaaaaaatatgtaaagagaaacaatggtcgataattttgg |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
40838797 |
aaagtgaaagatatagaagtccattggaatacatcaaattgtcccctgctaaaagtaagccaaaaaatatgtaaagagaaacaatggtggataattttgg |
40838698 |
T |
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| Q |
212 |
tttgg |
216 |
Q |
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||||| |
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| T |
40838697 |
tttgg |
40838693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 148
Target Start/End: Original strand, 4583207 - 4583343
Alignment:
| Q |
12 |
acagaattgaatataaatgctgtgaacttttgggaattaaggaaataagaaaatactgcattgaaggctaattgtgttgcacatagtaaagaataggtgg |
111 |
Q |
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|||||||||||||| |||||||| ||| |||| ||||| | ||| |||| |||| ||||||||||||||||| |||| |||| || |||| | |||| |
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| T |
4583207 |
acagaattgaatattaatgctgtaaacctttgagaattcaagaagaaagagaataatgcattgaaggctaattcagttgagcatattagagaaaaagtgg |
4583306 |
T |
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| Q |
112 |
aaagtgaaagatatagaagtccattggaatacatcaa |
148 |
Q |
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|||| | |||||||| ||| |||| ||||||||||| |
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| T |
4583307 |
aaagaggaagatatacaagcccatatgaatacatcaa |
4583343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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