View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21205_high_6 (Length: 616)
Name: NF21205_high_6
Description: NF21205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21205_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 471; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 12 - 527
Target Start/End: Complemental strand, 33129826 - 33129306
Alignment:
| Q |
12 |
attctactattatttgatggaggaatcgcaagccaatttccggttgtgtacggacaagtttgcttgcaagtaacgtggtaacccaaagcaaaagtcaatg |
111 |
Q |
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| T |
33129826 |
attctactattatttgatggaggaatcgcaagccaatttccggttgtgtacggacaggtttgcttgcaagtaacgtggtaacccaaagcaaaagtcaatg |
33129727 |
T |
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| Q |
112 |
tttttagagtttcaatgcttatattgactctagttacattaattatggaaccaaatac------tagacccacgttctcttacattgcaacttgcactga |
205 |
Q |
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| T |
33129726 |
tttttagagtttcaatgcttatattgactctagttacattaattatggaaccaaatacattaactagacccacgttctcttacattgcaacttgcactga |
33129627 |
T |
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| Q |
206 |
gcgacatagagaggagtggtgatgtggtactactatctttttgatagtgttaatgcgagtgagtgattattatatggcatgagaaaatgcaaacaaatga |
305 |
Q |
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| T |
33129626 |
gcgacatagagaggagtggtgatgtggtactactatctttttgatagtgttaatgcgagtgagtgatt-ttatatggcataagaaaatgcaaacaaatga |
33129528 |
T |
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| Q |
306 |
aattaccgtgaagtttcgatgtggtattggattagcaaggacgtacgtatgtacggttatatctcttcgaaacaacatgaagcttggtgtttaagtgctt |
405 |
Q |
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| T |
33129527 |
aattaccgtgaagtttcgatgtggtattggattagcaaggacgtgcgtatgtacggttatatctcttcgaaagaacatgaagcttggtgtttaagtgctt |
33129428 |
T |
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| Q |
406 |
ccaaatgtttcttcaatgaagcttcctagaaagaactcataggcttgttactcgcgctagatgcaataggctgttatagtttgtcctttttgtatggtgg |
505 |
Q |
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| T |
33129427 |
ccaaatgtttcttcaatgaagcttcctagaaagaactcataggcttgtttctcgcgctagatgcaataggctgttatagtttgtcctttttgtatggtgg |
33129328 |
T |
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| Q |
506 |
tttatctcatatggataattaa |
527 |
Q |
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| T |
33129327 |
tttatctcatatggataattaa |
33129306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 519 - 600
Target Start/End: Complemental strand, 33128806 - 33128727
Alignment:
| Q |
519 |
gataattaatttgctaagtgttgtgcttttttgccattttctcattctgttaacattctatactctctttcatattgtgaac |
600 |
Q |
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| T |
33128806 |
gataattaatt-gctaagtgttgtcctgttt-gccattttctcattatgttaacattctatactctctttcatattgtgaac |
33128727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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