View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21205_high_62 (Length: 247)
Name: NF21205_high_62
Description: NF21205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21205_high_62 |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 47902091 - 47902343
Alignment:
| Q |
1 |
aacaatttgaaagtaattaacattttgcttatatcttagaccagtaaacataattattttattgcttatataacaaaataaatgagaaacttgacaaatt |
100 |
Q |
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| T |
47902091 |
aacaatttgaaagtaattaacattt-gcttatatcttagaccagtaaacataattattttattgcttatataacaaaataaatgagaaacttgacaaatt |
47902189 |
T |
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| Q |
101 |
gtggtatta------------agcatgactatgaactgaattaagcacttgtttttcttataattacttacttgtatctcaacaattacgttactaaaag |
188 |
Q |
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| T |
47902190 |
gtggtattaagcactgaattaagcatgactatgaactgaattaagcacttgatttgcttaaaattacttacttgtatctcaacaattacgttactaaaag |
47902289 |
T |
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| Q |
189 |
catatgcaaaagctatgtttccaattgcttgaaaggtattccacatcttctctg |
242 |
Q |
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| T |
47902290 |
catatgcaaaagctatgtttccaattgcttgaaaggtattccacatcttctctg |
47902343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 151 - 239
Target Start/End: Original strand, 47908826 - 47908914
Alignment:
| Q |
151 |
attacttacttgtatctcaacaattacgttactaaaagcatatgcaaaagctatgtttccaattgcttgaaaggtattccacatcttct |
239 |
Q |
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| T |
47908826 |
attacttgcctgtatctcagcaattaccatactgaaagcataagcaaaagctatgtttccaattgcttggaaggtattccacaacttct |
47908914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 161 - 233
Target Start/End: Original strand, 47923289 - 47923361
Alignment:
| Q |
161 |
tgtatctcaacaattacgttactaaaagcatatgcaaaagctatgtttccaattgcttgaaaggtattccaca |
233 |
Q |
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| T |
47923289 |
tgtatttcagcaattacagtgctaaaagaatatgcaaaagctatgtttcctattgcttgaaaggtattccaca |
47923361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 190 - 240
Target Start/End: Original strand, 47916967 - 47917017
Alignment:
| Q |
190 |
atatgcaaaagctatgtttccaattgcttgaaaggtattccacatcttctc |
240 |
Q |
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| T |
47916967 |
atatgcaaatgctatgtttccaattgcctggaaggtattccacagcttctc |
47917017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 235
Target Start/End: Original strand, 47897672 - 47897706
Alignment:
| Q |
201 |
ctatgtttccaattgcttgaaaggtattccacatc |
235 |
Q |
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| T |
47897672 |
ctatgtttccaattgcttggaaggtattccacatc |
47897706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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