View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21205_high_68 (Length: 240)
Name: NF21205_high_68
Description: NF21205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21205_high_68 |
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Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 4 - 199
Target Start/End: Original strand, 47812106 - 47812301
Alignment:
| Q |
4 |
agaaggtcagttgaagtccacaaagcaatgccagtacttttgtgacaaaacgttttaaaaattatgggagcagtatcttaaggtgggccatttccatata |
103 |
Q |
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| T |
47812106 |
agaaggtcagttgaagtccacaaagcaatgctagtacttttgtgacaaaacgttttaaaaattatgggagcagtatcttaaggtgggccatttccatata |
47812205 |
T |
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| Q |
104 |
atatgaatcttgtgatcaccatcatattaaattttcaactgtgcgtttgtgcgtgctttggacttgtaaaaaatgaatactattgataaattacat |
199 |
Q |
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| T |
47812206 |
atatgaatcttgtgatcaccattatattaaattttcaactgtgcgtttgtgcgtgctttggacttgtaaaaaatgaatactattgataaattacat |
47812301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 182 - 237
Target Start/End: Original strand, 47812323 - 47812379
Alignment:
| Q |
182 |
actattgataaattaca-ttaatgatatgtgtgactttaaaaatagttacgattaaa |
237 |
Q |
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| T |
47812323 |
actattgataaattacaattaatgatatgtgtgactttaaaaataattacaattaaa |
47812379 |
T |
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