View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21205_high_70 (Length: 239)

Name: NF21205_high_70
Description: NF21205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21205_high_70
NF21205_high_70
[»] chr4 (5 HSPs)
chr4 (13-174)||(31951115-31951276)
chr4 (13-174)||(55319973-55320138)
chr4 (171-221)||(31951719-31951769)
chr4 (171-221)||(55320620-55320670)
chr4 (177-213)||(31606986-31607022)
[»] chr5 (2 HSPs)
chr5 (105-174)||(2778272-2778341)
chr5 (176-213)||(12632120-12632157)
[»] chr1 (1 HSPs)
chr1 (176-213)||(45290907-45290944)
[»] chr7 (1 HSPs)
chr7 (126-166)||(19055545-19055585)
[»] chr3 (2 HSPs)
chr3 (126-166)||(50807847-50807887)
chr3 (126-166)||(50867991-50868031)


Alignment Details
Target: chr4 (Bit Score: 134; Significance: 7e-70; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 13 - 174
Target Start/End: Original strand, 31951115 - 31951276
Alignment:
Q  13 tgaattaagacatgagaaaaccaaacattggaactgacccatagtatcatccaatttccgctaaaccatcaatcctacaaacatnnnnnnnnccttatta 112  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||        ||||||||    
T  31951115 tgaattaagacatgagaaaaccaaacattggaactgacccacagtatcatccaatttccgctaaaccatcaatcctacaaacataaaaaaaaccttatta 31951214  T
Q  113 gcaaaggcaagtgaaatattaatccattatattgagcactttagtcccctaacttaagatca 174  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31951215 gcaaaggcaagtgaaatattaatccattatattgagcactttagtcccctaacttaagatca 31951276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 13 - 174
Target Start/End: Original strand, 55319973 - 55320138
Alignment:
Q  13 tgaattaagacatgagaaaaccaaacattggaactgacccatagt-----atcatccaatttccgctaaaccatcaatcctacaaacatnnnnnnnncct 107  Q
    ||||||||||||||| ||||||||||||||| ||||||| | |||     |||| |||||||||| |||| |||||||||| |||||||        |||    
T  55319973 tgaattaagacatgaaaaaaccaaacattggtactgacctacagttttatatcacccaatttccgttaaatcatcaatccttcaaacataaaaaaa-cct 55320071  T
Q  108 tattagcaaaggcaagtgaaatattaatccattatattgagcactttagtcccctaacttaagatca 174  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55320072 tattagcaaaggcaagtgaaatattaatccattatattgagcactttagtcccctaacttaagatca 55320138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 171 - 221
Target Start/End: Original strand, 31951719 - 31951769
Alignment:
Q  171 atcaataaatttaatttcacgacacttgtaaaataaattagaggccaatcc 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31951719 atcaataaatttaatttcacgacacttgtaaaataaattagaggccaatcc 31951769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 171 - 221
Target Start/End: Original strand, 55320620 - 55320670
Alignment:
Q  171 atcaataaatttaatttcacgacacttgtaaaataaattagaggccaatcc 221  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  55320620 atcaataaatttaatttcatgacacttgtaaaataaattagaggccaatcc 55320670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 213
Target Start/End: Complemental strand, 31607022 - 31606986
Alignment:
Q  177 aaatttaatttcacgacacttgtaaaataaattagag 213  Q
    ||||||||||||| |||||||||||||||||||||||    
T  31607022 aaatttaatttcatgacacttgtaaaataaattagag 31606986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 105 - 174
Target Start/End: Complemental strand, 2778341 - 2778272
Alignment:
Q  105 ccttattagcaaaggcaagtgaaatattaatccattatattgagcactttagtcccctaacttaagatca 174  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  2778341 ccttattagcaaaggcaggtgaaatactaatccattatattgagcactttagtccactaacttaagatca 2778272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 213
Target Start/End: Original strand, 12632120 - 12632157
Alignment:
Q  176 taaatttaatttcacgacacttgtaaaataaattagag 213  Q
    |||||||||||||| |||||||||||||||||||||||    
T  12632120 taaatttaatttcatgacacttgtaaaataaattagag 12632157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 213
Target Start/End: Original strand, 45290907 - 45290944
Alignment:
Q  176 taaatttaatttcacgacacttgtaaaataaattagag 213  Q
    |||||||||||||| |||||||||||||||||||||||    
T  45290907 taaatttaatttcatgacacttgtaaaataaattagag 45290944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 166
Target Start/End: Complemental strand, 19055585 - 19055545
Alignment:
Q  126 aaatattaatccattatattgagcactttagtcccctaact 166  Q
    ||||||||||||||||||||| ||||||||| || ||||||    
T  19055585 aaatattaatccattatattgggcactttagcccactaact 19055545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 166
Target Start/End: Original strand, 50807847 - 50807887
Alignment:
Q  126 aaatattaatccattatattgagcactttagtcccctaact 166  Q
    ||||||||||||||||||||| |||||||| ||| ||||||    
T  50807847 aaatattaatccattatattgggcactttattccactaact 50807887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 166
Target Start/End: Complemental strand, 50868031 - 50867991
Alignment:
Q  126 aaatattaatccattatattgagcactttagtcccctaact 166  Q
    ||||||||||||||||||||| |||||||| ||| ||||||    
T  50868031 aaatattaatccattatattgggcactttattccactaact 50867991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University