View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21205_high_9 (Length: 556)

Name: NF21205_high_9
Description: NF21205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21205_high_9
NF21205_high_9
[»] chr1 (2 HSPs)
chr1 (11-290)||(6354205-6354491)
chr1 (353-543)||(6354573-6354766)
[»] chr2 (2 HSPs)
chr2 (51-108)||(3278204-3278261)
chr2 (54-109)||(28770613-28770668)
[»] chr4 (1 HSPs)
chr4 (51-98)||(37782077-37782124)
[»] chr8 (1 HSPs)
chr8 (67-109)||(31513184-31513227)
[»] chr5 (1 HSPs)
chr5 (71-109)||(30900069-30900108)
[»] scaffold0016 (1 HSPs)
scaffold0016 (53-108)||(102332-102387)
[»] chr6 (1 HSPs)
chr6 (54-98)||(33721398-33721441)


Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 11 - 290
Target Start/End: Original strand, 6354205 - 6354491
Alignment:
Q  11 caaaggaggaaacttttagtaattttagaggctaacgttattgggttggaaaacactttgtaaacaccttgg-tagtgagatttcattagaggaaggat- 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||     
T  6354205 caaaggaggaaacttttagtaattttagaggctaacgttattgggttggaaaacactttgtaaacactttgggtagtgagatctcattagaggaaggatc 6354304  T
Q  109 -----attgacgagtttggtagcaaaaatggtggaaatcggctctttgaagaggtgtttcatgaataactccatcgatcttttcctattttacgatttgc 203  Q
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6354305 aaaggattgacgagtttggtagcaaaaatggtggaaatcggctctttgaagaggtgtttcatgaataactccatcgatcttttcctattttacgatttgc 6354404  T
Q  204 ggatgatacnnnnnnnatttgtgaagggaattgagagaatttatggtgtcttaaatctgttactagaatctttgcattgatttcggg 290  Q
    |||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6354405 ggatgatactttttttatttgtgaagggaattgagagaatttatggtgtcttaaatctgttactagaatctttgcattgatttcggg 6354491  T

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Target: chr1; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 353 - 543
Target Start/End: Original strand, 6354573 - 6354766
Alignment:
Q  353 acattgttatattgatcaatttcctattaagttg---ggtattttgatgggtgccaatctaaggagagttgatacttggaagcctattgtgtcgtcgttg 449  Q
    |||||||||||||||||| |||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6354573 acattgttatattgatcattttcctattaagttgttcggtattttgatgggtgccaatctaaggagagttgatacttggaagcctattgtgtcgtcgttg 6354672  T
Q  450 atgaaaatgttgtctacttgttggaaaagtagacaattgtcaattagagagagtctgactttgattaactcagaattttcaatgatggtgttga 543  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6354673 atgaaaatgttgtctacttgttggaaaagtagacaattgtcaattagagagagtctgactttgattaactcagaattttcaatgatggtgttga 6354766  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 108
Target Start/End: Complemental strand, 3278261 - 3278204
Alignment:
Q  51 ttgggttggaaaacactttgtaaacaccttgg-tagtgagatttcattagaggaaggat 108  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||||| |||| ||||    
T  3278261 ttgggttggaaaaca-tttgtaaacaccttggatagtgagatttcattataggacggat 3278204  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 54 - 109
Target Start/End: Original strand, 28770613 - 28770668
Alignment:
Q  54 ggttggaaaacactttgtaaacaccttgg-tagtgagatttcattagaggaaggata 109  Q
    |||||||||||| |||||||||||||||| ||||||||| |||||||  ||||||||    
T  28770613 ggttggaaaaca-tttgtaaacaccttgggtagtgagatctcattagctgaaggata 28770668  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 51 - 98
Target Start/End: Complemental strand, 37782124 - 37782077
Alignment:
Q  51 ttgggttggaaaacactttgtaaacaccttgg-tagtgagatttcatta 98  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  37782124 ttgggttggaaaaca-tttgtaaacaccttgggtagtgagatttcatta 37782077  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 109
Target Start/End: Original strand, 31513184 - 31513227
Alignment:
Q  67 tttgtaaacaccttgg-tagtgagatttcattagaggaaggata 109  Q
    |||||||||||||||  |||||||||||||||||||||||||||    
T  31513184 tttgtaaacaccttgaatagtgagatttcattagaggaaggata 31513227  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 109
Target Start/End: Complemental strand, 30900108 - 30900069
Alignment:
Q  71 taaacaccttgg-tagtgagatttcattagaggaaggata 109  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  30900108 taaacaccttgggtagtgagatttcattagaggaaggata 30900069  T

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Target: scaffold0016 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 53 - 108
Target Start/End: Original strand, 102332 - 102387
Alignment:
Q  53 gggttggaaaacactttgtaaacaccttggta-gtgagatttcattagaggaaggat 108  Q
    ||||||||||||| |||| ||||||||||||| || |||||| ||||||||||||||    
T  102332 gggttggaaaaca-tttgaaaacaccttggtaagtaagattttattagaggaaggat 102387  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 54 - 98
Target Start/End: Original strand, 33721398 - 33721441
Alignment:
Q  54 ggttggaaaacactttgtaaacaccttggtagtgagatttcatta 98  Q
    |||||| ||||| |||||||||||||| |||||||||||||||||    
T  33721398 ggttgggaaaca-tttgtaaacacctttgtagtgagatttcatta 33721441  T

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