View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21205_low_10 (Length: 584)
Name: NF21205_low_10
Description: NF21205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21205_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 272 - 568
Target Start/End: Complemental strand, 41094921 - 41094625
Alignment:
| Q |
272 |
cgtacaagtttcatgcatgcatcctctgagctatctcatctcatgtttgcaccatctcctaagaatatctatgcaatttgacaaattcctaaacaacagt |
371 |
Q |
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| T |
41094921 |
cgtacaagtttcatgcatgcatcctctgagctatctcatctcatgtttgcaccatctcctaagaatatctatgcaatttgacaaattcctaaacaacagt |
41094822 |
T |
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| Q |
372 |
agatatttggcatatggaagatttgtggatcttgtctaccaaaatggtacacggtggagcatgtatgccctagtagagaagtcaaacagctaatcatgac |
471 |
Q |
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| T |
41094821 |
agatatttggcatatggaagatttgtggatcttgtctaccaaaatggtacacggtggagcatgtatgccctagtagagaagtcaaacagctaatcatgac |
41094722 |
T |
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| Q |
472 |
gataactctcaaataaaatcccaaagccactctaccctaaaaagagcacatacggccttcccctccattctcctagattcctcaatattcaccctat |
568 |
Q |
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| T |
41094721 |
gataactctcaaataaaatcccaaagccactctaccctaaaaagagcacatacggccttcccctccattctcctagattcctcaatactcaccctat |
41094625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 19 - 201
Target Start/End: Complemental strand, 41095174 - 41094992
Alignment:
| Q |
19 |
aaatagacaccataaaatatctgtgtaggtacgtatcaacatgcatcatggaccaatattcatcaactttgagattccaatgtttatacttccactgaaa |
118 |
Q |
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| T |
41095174 |
aaataaacaccataaaatatctgtgtaggtacgtatcaacatgcatcatggaccaatattcatcaactttgagattccaatgtttatacttccactgaaa |
41095075 |
T |
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| Q |
119 |
tactagaggctaccattgatttgtcaatgtctgaatctacttgattacaaactatttagaaaatattcgtaaatccatcactg |
201 |
Q |
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| T |
41095074 |
tactagaggctaccattgatttgtcaatgtctgaatctacttgattacaaactatttagaaaatattcgtaaatccaccactg |
41094992 |
T |
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