View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21205_low_13 (Length: 505)

Name: NF21205_low_13
Description: NF21205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21205_low_13
NF21205_low_13
[»] chr3 (4 HSPs)
chr3 (111-201)||(347734-347824)
chr3 (38-105)||(347289-347356)
chr3 (288-336)||(347889-347937)
chr3 (244-282)||(347823-347861)
[»] chr1 (1 HSPs)
chr1 (194-245)||(33317497-33317548)


Alignment Details
Target: chr3 (Bit Score: 87; Significance: 2e-41; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 111 - 201
Target Start/End: Original strand, 347734 - 347824
Alignment:
Q  111 tgaatgagaagaaaaatgatgatcaagtatcaaggcataaggggaatccatgttacaaatttttcaagattgagattcagatgggtttcca 201  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  347734 tgaataagaagaaaaatgatgatcaagtatcaaggcataaggggaatccatgttacaaatttttcaagattgagattcagatgggtttcca 347824  T

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Target: chr3; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 38 - 105
Target Start/End: Original strand, 347289 - 347356
Alignment:
Q  38 taatttttcatattcgctatatgggttacatagcctcctctctatgaatttaatatctaatggtgctt 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  347289 taatttttcatattcgctatatgggttacatagcctcctctctatgaatttaatatctaatggtgctt 347356  T

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Target: chr3; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 288 - 336
Target Start/End: Original strand, 347889 - 347937
Alignment:
Q  288 tttaacacaatggttgttattggctaaaacataggatccgatgttttga 336  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  347889 tttaacacaatggttgttattggctaaaacataggatccgatgttttga 347937  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 244 - 282
Target Start/End: Original strand, 347823 - 347861
Alignment:
Q  244 catagttagtctaccacataagtgaatatgctcgacttt 282  Q
    ||||||||||||||||||||||| || ||||||||||||    
T  347823 catagttagtctaccacataagttaagatgctcgacttt 347861  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 194 - 245
Target Start/End: Complemental strand, 33317548 - 33317497
Alignment:
Q  194 ggtttccaggtttgcctaaaggttaggtgccatcaaacaatgccaacgaaca 245  Q
    |||||||| ||||||  | |||||||||||||||||||||||||||| ||||    
T  33317548 ggtttccatgtttgcaaagaggttaggtgccatcaaacaatgccaacaaaca 33317497  T

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