View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21205_low_16 (Length: 468)
Name: NF21205_low_16
Description: NF21205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21205_low_16 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 11 - 450
Target Start/End: Original strand, 29207360 - 29207803
Alignment:
| Q |
11 |
cagagaaaggattattaaagcattattatattataatagtaataatagtaaaagaggcaaaaagtgctaattatgtgatatagtgttgttggtaatgcac |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29207360 |
cagagaaaggattattaaagcattattatattataatagtaataatagtaaaagaggcaaaaagtgctaattatgtgatatagtgttgttggtaatgcac |
29207459 |
T |
|
| Q |
111 |
ttgatctaaataattgtggtccaataatatatatcatgtctaaccaacttaaaagaaatat----ttgagtgcaaaattaagtgtggatgcctataacaa |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
29207460 |
ttgatctaaataattgtggtccaataatatatatcaggtctaaccaacttaaaagaaatatatatttgagtgcaaaattaagcgtggatgcctataacaa |
29207559 |
T |
|
| Q |
207 |
ctatctaaagtatgacatatcaagaccacctttttcaaaattatttgaaaataggaatttgtctttctatatatagaagcaaatcaacacttaccaaata |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29207560 |
ctatctaaagtatgacatatcaagaccacctttttcaaaattatttataaataggaatttgtctttctatatatagaagcaaatcaacacttaccaaata |
29207659 |
T |
|
| Q |
307 |
gtggttcaatatatctatcatttgtagcataatacttttaacaaagtttaaagagatatgtgtagtttaggcaattgtgatttaaagaaacgatgacaag |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
29207660 |
gtggttcaatatatctatcatttgtagcataatacttttaacaaagtttaaagagatatgtgtagtttaggcaattgtgatttaaagaaatgatgacaag |
29207759 |
T |
|
| Q |
407 |
tagaaagttgcatggataaactttgttaggttagttgtactttc |
450 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29207760 |
tagaaagttgcatggataaactttgttaggttagttgtactttc |
29207803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University