View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21205_low_18 (Length: 450)
Name: NF21205_low_18
Description: NF21205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21205_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 4 - 432
Target Start/End: Complemental strand, 36547298 - 36546860
Alignment:
| Q |
4 |
aaaatgttcaaagtgctgtgttcggagaatatgttgaaataacattaataacattaacaaatgcaataaatcgtcttctgtgataaactccttcctccta |
103 |
Q |
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| T |
36547298 |
aaaatgttcaaagtgttgtgttcgaagaatatgttgaaataacattaataacattaacaaatgcaataaatcgtcttgtgtgataaactccttcctccta |
36547199 |
T |
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| Q |
104 |
cttctttgagtgcaggtgttcgaagtgggttgaaaatttgggctcgtcaaaatgttcaaatttttccgtggcaatcaattcttgaaagacttcctaatag |
203 |
Q |
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| T |
36547198 |
cttctttgagtgcaggtgttcgaagtgagttgaaaatttgggctcgtcaaaatgttcaaatttttccgtagcaattaattcttgaaagacttcctaatag |
36547099 |
T |
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| Q |
204 |
gatgaatctagctacaacgggagatgtggtctttgtacttgattgtttttcttcatcgtctttatgaatcaccataaaagacttattttaatttagcatg |
303 |
Q |
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| T |
36547098 |
ggggaatctagctacaacgggagatgtggtctttatacttgattatttttcttcatcgtctttatgaatcaccataaaagacttattttaatttagcatg |
36546999 |
T |
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| Q |
304 |
caacaatttataagatttgtgaagc----------atgattttttcttcgaagaacatagaacttgaggacttggttgatgagcttaattcaatcttttg |
393 |
Q |
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| T |
36546998 |
caacaatttataagatttgtgaagcaagaaatgagatgattttttcttccaagaacatagaacttgaggacttggttgatgagcttaattcaatcttttg |
36546899 |
T |
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| Q |
394 |
gagatggtttcgagataggaagaaagggagggaccttga |
432 |
Q |
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| T |
36546898 |
gagatggtttcgagataggaagaaagggagggaccttga |
36546860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 112 - 163
Target Start/End: Complemental strand, 36547338 - 36547287
Alignment:
| Q |
112 |
agtgcaggtgttcgaagtgggttgaaaatttgggctcgtcaaaatgttcaaa |
163 |
Q |
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| T |
36547338 |
agtgcagatattcgaagtgggttgaaaatttgggctcgttaaaatgttcaaa |
36547287 |
T |
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