View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21205_low_21 (Length: 436)
Name: NF21205_low_21
Description: NF21205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21205_low_21 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 12 - 411
Target Start/End: Original strand, 45103536 - 45103936
Alignment:
| Q |
12 |
acagaacagaacacattttcttctgatggagcaaacatgggaaaattggcctcttcattcggtaataacactagctacacatataattatttctcataag |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45103536 |
acagaacagaacacattttcttctgatggagcaaacatgggaaaattggcctcttcattcggtaataacactagctacacatataattatttctcataag |
45103635 |
T |
|
| Q |
112 |
ttatactttatgnnnnnnnataaatcgtaaatcattatgatcaacnnnnnnnnn-tgttatgtatcatttatattttctcataaaccttgttttaacttt |
210 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45103636 |
ttatactttatgtttttttataaatcctaaatcattatgatcaacaaaaaaaaaatgttatgtatcatttatattttctcataaaccttgttttaacttt |
45103735 |
T |
|
| Q |
211 |
ttaactaactgtcattattacaataggaaatggttgatgtagagaatatgcaagggcaatattgtcatcaaacaagtactgatgatgaagaagagttctt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45103736 |
ttaactaactgtcattattacaataggaaatggttgatgtagagaatatgcaagggcaatattgtcatcaaacaagtactgatgatgaagaagagttctt |
45103835 |
T |
|
| Q |
311 |
gagagacataattcttcagcaacctgttgcatattctggaagcagtttatcatcttctagtgagatggacggttcagatagctcggggaaaaagcttcat |
410 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
45103836 |
gagagacataattcttcagcaacctgttacatattctggaagcagtttatcatcttctagtgagatggacggttcagatagctcggggaaaaaacttcat |
45103935 |
T |
|
| Q |
411 |
c |
411 |
Q |
| |
|
| |
|
|
| T |
45103936 |
c |
45103936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 230 - 418
Target Start/End: Original strand, 45130384 - 45130569
Alignment:
| Q |
230 |
acaataggaaatggttgatgtagagaatatgcaagggcaatattgtcatcaaacaagtactgatgatgaagaagagttcttgagagacataattcttcag |
329 |
Q |
| |
|
|||||||||| ||| |||||||||| | ||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
45130384 |
acaataggaattgggtgatgtagaggttttgctagggcaatattgtcatcaaactagtgctgatgatgaagaagagttcttgagagacataatccttcag |
45130483 |
T |
|
| Q |
330 |
caacctgttgcatattctggaagcagtttatcatcttctagtgagatggacggttcagatagctcggggaaaaagcttcatccttcatc |
418 |
Q |
| |
|
||||||||| ||||||||||| ||| ||||||| |||| ||||||||| || |||||| |||| ||||||||||||||||||||| |
|
|
| T |
45130484 |
caacctgttacatattctgga---agtatatcatcctctaatgagatggatggctcagattgctcaaagaaaaagcttcatccttcatc |
45130569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University