View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21205_low_24 (Length: 395)
Name: NF21205_low_24
Description: NF21205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21205_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 35227994 - 35227618
Alignment:
| Q |
1 |
tccatgaacgccattttatcccgaactccatttctttcacgaatttcctttctctcatacccaattcagttagcgaaattggtcgacgtatagattaatc |
100 |
Q |
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| T |
35227994 |
tccatgaacaccattttatcccgaactccatttctttcacgaatttcctttctctcatacccaattcagttagcgaaattggtcgacgtatggattaatc |
35227895 |
T |
|
| Q |
101 |
ataccgaataatcatggaggcgattagaagaatgtctgacatggtggctcaatttttatgatgttaaattctatcgaaagtgaatggactacaattaaaa |
200 |
Q |
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| T |
35227894 |
ataccgtaaaatcatggaggcgcttagaagaatgcatgacatggtggctcaatttttatgatgttaaattctatcgaaagtgaatggaccacaattaaaa |
35227795 |
T |
|
| Q |
201 |
ttttatatcataaaataataatattagtnnnnnnnnnngtatttaaagctaattatcattgacatttgaaggttataaagtaaggaaaattgatttcttt |
300 |
Q |
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| T |
35227794 |
ttttatatcataaaataataatattaat--aaaaaaaagtatttaaagctaattatcattgacatttgaaggttatcaagtaaggaaaattgatttcttt |
35227697 |
T |
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| Q |
301 |
aacggtagaagttttttccnnnnnnnntggtgacttaaaagctatttgttattttaaaaatatttatttacattaaaac |
379 |
Q |
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| T |
35227696 |
aacagtagaagttttttccaaaaaaaatggtgacttaaaagctatttgttattttaaaaatatttatttacattaaaac |
35227618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 272 - 369
Target Start/End: Original strand, 38545622 - 38545720
Alignment:
| Q |
272 |
gttataaagtaaggaaaattgatttctttaacgg-tagaagtttttt-ccnnnnnnnntggtgacttaaaagctatttgttattttaaaaatatttattt |
369 |
Q |
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| T |
38545622 |
gttataaagtaaggaaaattgatttcttaaatagcttgaagtttttttccaaataaactggtgacttaaa-gctatttgttattataaaaatatttattt |
38545720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 226
Target Start/End: Original strand, 38545214 - 38545247
Alignment:
| Q |
193 |
aattaaaattttatatcataaaataataatatta |
226 |
Q |
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| T |
38545214 |
aattaaaattttatatcataaaataataacatta |
38545247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 134
Target Start/End: Original strand, 13556822 - 13556890
Alignment:
| Q |
66 |
tcagttagcgaaattggtcgacgtatagattaatcataccgaataatcatggaggcgattagaagaatg |
134 |
Q |
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| T |
13556822 |
tcagctagagaaattgatcaacgtatagatgaatcataccgtcaaatcatggaggcgcttacaagaatg |
13556890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 240 - 299
Target Start/End: Complemental strand, 43976679 - 43976621
Alignment:
| Q |
240 |
tatttaaagctaattatcattgacatttgaaggttataaagtaaggaaaattgatttctt |
299 |
Q |
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||||||||| ||||||||||||||||||| | |||||||| |||||||||| ||||||| |
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| T |
43976679 |
tatttaaagttaattatcattgacatttg-atgttataaaaaaaggaaaattaatttctt |
43976621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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