View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21205_low_25 (Length: 385)
Name: NF21205_low_25
Description: NF21205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21205_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 63 - 366
Target Start/End: Complemental strand, 14775453 - 14775150
Alignment:
| Q |
63 |
taaagaaggttgtgcgaaaaaa-ttgcctgaaggtgtgaatgagcgaggactttctttggcaggatttatatatcttcatgccctcttcttagaaaaaat |
161 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||||||| |
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| T |
14775453 |
taaagaaggttgtgcgaaaaaaattgcctgaaggtgtgaatgagcggggactttctttggcaggatttatatctcttcacgccctcttcttagaaaaaat |
14775354 |
T |
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| Q |
162 |
cccccgtgagaaaacatggaccgtgctcaggaagtttggatataatgatgatatcaagcttactgataatttgattccacctttgaaacgtgcacctggt |
261 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |
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| T |
14775353 |
gccccgtgagaaaacatggaccgtgctcaggaagtttggatataatgatgatatcaagcttgctgataatttgattccacctttgaaacgtgcacctgat |
14775254 |
T |
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| Q |
262 |
caggtgtttcgtttcagatgaactgtgaccttannnnnnnatgttctttatatgttatacatgtttgtattcattttgttgagtataagaaacttatctt |
361 |
Q |
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| T |
14775253 |
caggtgtttcttttcagatgaattgtgaccttatttttttatgttctttatatgttatacatgtttgtattca-tttgttgagtataagaaacttatctt |
14775155 |
T |
|
| Q |
362 |
attct |
366 |
Q |
| |
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||||| |
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| T |
14775154 |
attct |
14775150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 63 - 343
Target Start/End: Complemental strand, 17882826 - 17882546
Alignment:
| Q |
63 |
taaagaaggttgtgcgaaaa-aattgcctgaaggtgtgaatgagcgaggactttctttggcaggatttatatatcttcatgccctcttcttagaaaaaat |
161 |
Q |
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||||||||||||||| |||| ||||| |||||||||||||||| |||||| || ||||| |||| ||| ||| |||||||| ||| ||| |||||||| |
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| T |
17882826 |
taaagaaggttgtgcaaaaagaattgtctgaaggtgtgaatgaacgaggaattactttgacagggtttctatttcttcatgtccttttcatagaaaaagg |
17882727 |
T |
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| Q |
162 |
cccccgtgagaaaacatggaccgtgctcaggaagtttggatataatgatgatatcaagcttactgataatttgattccacctttgaaacgtgcacctggt |
261 |
Q |
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|| | ||||| ||||||||| |||||||||| |||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||| | |
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| T |
17882726 |
gcctcttgagacaacatggactgtgctcaggaggtttggatataatgatgatatcaagcttgctgatgatttaattccacctttgaaacgtgcacctgat |
17882627 |
T |
|
| Q |
262 |
caggtgtttcgtttcagatgaactgtgaccttannnnnnnatgttctttatatgttatacatgtttgtattcattttgttga |
343 |
Q |
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|||||||||| ||| ||||||| |||||||| | |||||||| |||||||||| |||||||||||| || ||||| |
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| T |
17882626 |
caggtgtttcttttgagatgaattgtgacctca-tgatttatgttcttagtatgttatacctgtttgtattcaattagttga |
17882546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 63 - 340
Target Start/End: Complemental strand, 15050289 - 15050014
Alignment:
| Q |
63 |
taaagaaggttgtgcgaaaaaatt-gcctgaaggtgtgaatgagcgaggactttctttggcaggatttatatatcttcatgccctcttcttagaaaaaat |
161 |
Q |
| |
|
||||||||||||||| || ||||| | |||||||||||||||| |||| |||| | ||| || ||||| ||||||||||| |||| ||| | ||||| |
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| T |
15050289 |
taaagaaggttgtgcaaacaaatttgtctgaaggtgtgaatgaacgagaacttaccttgacatgatttctatatcttcatacccttttcatggaaaaggg |
15050190 |
T |
|
| Q |
162 |
cccccgtgagaaaacatggaccgtgctcaggaagtttggatataatgatgatatcaagcttactgataatttgattccacctttgaaacgtgcacctggt |
261 |
Q |
| |
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|| | |||| |||||||||||| ||||||||||||||||||||| |||||||||||||| ||||| |||| ||||||||||||||| ||||||| | |
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| T |
15050189 |
gcctcctgaggcaacatggaccgtactcaggaagtttggatataattatgatatcaagctttctgatgatttatttccacctttgaaac--gcacctgat |
15050092 |
T |
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| Q |
262 |
caggtgtttcgtttcagatgaactgtgaccttannnnnnnatgttctttatatgttatacatgtttgtattcattttgt |
340 |
Q |
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||||| |||| ||| |||| || |||| | | | || |||||||||||||||||||||||||||||| ||||| |
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| T |
15050091 |
caggtctttcttttgagataaattgtggcatca-tgtattatattctttatatgttatacatgtttgtattcaatttgt |
15050014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 91 - 280
Target Start/End: Complemental strand, 15017491 - 15017302
Alignment:
| Q |
91 |
gaaggtgtgaatgagcgaggactttctttggcaggatttatatatcttcatgccctcttcttagaaaaaatcccccgtgagaaaacatggaccgtgctca |
190 |
Q |
| |
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||||| |||||||| ||||||||| ||| |||||||| ||| |||||||||||| ||| |||||||| || | |||| ||||||||| ||||| | |
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| T |
15017491 |
gaaggcgtgaatgaacgaggacttacttcaacaggatttctatttcttcatgcccttttcatagaaaaagggcctcttgaggcaacatggactgtgctaa |
15017392 |
T |
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| Q |
191 |
ggaagtttggatataatgatgatatcaagcttactgataatttgattccacctttgaaacgtgcacctggtcaggtgtttcgtttcagat |
280 |
Q |
| |
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||||||||||||||| ||||| |||||||| ||| | |||| |||| |||||||| | |||||||| ||||||||||| ||| |||| |
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| T |
15017391 |
aaaagtttggatataattatgatgtcaagcttgctgctgatttatttccgcctttgaagcttgcacctgatcaggtgtttcttttgagat |
15017302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 14781564 - 14781516
Alignment:
| Q |
18 |
actcaaaccaactaatatgatccttgaacttgtggatcattaaaataaa |
66 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14781564 |
actcaaaccaactaatatgatccttgaacttgtggatcattaaaataaa |
14781516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 63 - 228
Target Start/End: Original strand, 36874288 - 36874454
Alignment:
| Q |
63 |
taaagaaggttgtgcgaaa-aaattgcctgaaggtgtgaatgagcgaggactttctttggcaggatttatatatcttcatgccctcttcttagaaaaaat |
161 |
Q |
| |
|
||||||||||||||| | | |||||| |||||||||| || || ||||||||| ||||| | |||||| ||| |||||||||||| ||| |||||||| |
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| T |
36874288 |
taaagaaggttgtgcaagataaattgtctgaaggtgttaacgaacgaggacttactttgacgggatttctatttcttcatgcccttttcatagaaaaagg |
36874387 |
T |
|
| Q |
162 |
cccccgtgagaaaacatggaccgtgctcaggaagtttggatataatgatgatatcaagcttactgat |
228 |
Q |
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| | ||||| |||||||| |||||||| ||||| |||||||||||||| ||||||||| ||||| |
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| T |
36874388 |
gcgtcttgagactacatggactgtgctcagaaagttcggatataatgatgaaatcaagcttgctgat |
36874454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 195 - 293
Target Start/End: Original strand, 53866658 - 53866756
Alignment:
| Q |
195 |
gtttggatataatgatgatatcaagcttactgataatttgattccacctttgaaacgtgcacctggtcaggtgtttcgtttcagatgaactgtgacctt |
293 |
Q |
| |
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|||||||||||||||||||||||| ||| ||||| || | ||||| |||||||||||| |||| ||||||||||| ||| | ||||| |||| |||| |
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| T |
53866658 |
gtttggatataatgatgatatcaaacttgctgatcatctaattccggatttgaaacgtgctcctgatcaggtgtttcttttgatatgaaatgtggcctt |
53866756 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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