View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21205_low_27 (Length: 382)
Name: NF21205_low_27
Description: NF21205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21205_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 11 - 365
Target Start/End: Original strand, 31548159 - 31548510
Alignment:
| Q |
11 |
cataggcaaagatgcaaacctaaaatgaaaa-catcgtatttcagaataaattccaatggttaatgtgtatgtatgcatattgatttaaaaacatacata |
109 |
Q |
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| T |
31548159 |
cataggcaaagatgcaaacctaaaatgaaaaacttcatatttcagaataaatccaaatggttaatgtgtatgtatccatattgattta----catgcata |
31548254 |
T |
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| Q |
110 |
tttgaattgcagcataactgacatgtgccttatatgtagcattgatagatcagaaccaaagaaatccaaggaaaaatgtgaaaaatgctatacaacactt |
209 |
Q |
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| T |
31548255 |
tttgaatagcagcataactgagacgtgccttatatgtagcattgatagatcagaaccaaagaaatccaaggaaaaatgtgaaaaatgatatacaaagctt |
31548354 |
T |
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| Q |
210 |
acaacagaagaacttttacttaccttataaccatcaagagcactttgtacaagctgtgaaacttctacaaaaacttcttcttgtgatacgtcttgtataa |
309 |
Q |
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| T |
31548355 |
acagcagaagagctttgaattaccttataaccatcaagagcactttgcacaagctgtgaaacttctacaaacacttcttcttgtgatatgtcttgtataa |
31548454 |
T |
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| Q |
310 |
aaactttatcaaatttaaaagaatgcttctggcctaaaaacaaaataggagtcaca |
365 |
Q |
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| T |
31548455 |
aaactttatcaaatttaaaagaatgcttctggcctaaaaacaaaataggagtcaca |
31548510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 229 - 349
Target Start/End: Complemental strand, 34650793 - 34650673
Alignment:
| Q |
229 |
ttaccttataaccatcaagagcactttgtacaagctgtgaaacttctacaaaaacttcttcttgtgatacgtcttgtataaaaactttatcaaatttaaa |
328 |
Q |
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|||||||||||||||||||||||||||| ||||| ||||||| ||| ||| |||||||||||| || | || || ||||||| |||||||| | || |
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| T |
34650793 |
ttaccttataaccatcaagagcactttgcacaagttgtgaaatttccgtaaatacttcttcttgtaatgcatcaggtgcaaaaactctatcaaatgtgaa |
34650694 |
T |
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| Q |
329 |
agaatgcttctggcctaaaaa |
349 |
Q |
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|||||| || || |||||||| |
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| T |
34650693 |
agaatgtttttgacctaaaaa |
34650673 |
T |
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