View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21205_low_28 (Length: 364)

Name: NF21205_low_28
Description: NF21205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21205_low_28
NF21205_low_28
[»] chr7 (7 HSPs)
chr7 (1-362)||(4554469-4554830)
chr7 (1-234)||(37616821-37617053)
chr7 (1-234)||(36828794-36829025)
chr7 (6-201)||(43282672-43282867)
chr7 (6-210)||(4968100-4968304)
chr7 (69-135)||(18713225-18713292)
chr7 (274-311)||(37617094-37617131)
[»] chr5 (5 HSPs)
chr5 (1-196)||(35228096-35228291)
chr5 (268-353)||(35228346-35228431)
chr5 (1-210)||(33672137-33672346)
chr5 (6-86)||(21286116-21286196)
chr5 (302-353)||(33672504-33672555)
[»] scaffold0044 (1 HSPs)
scaffold0044 (6-311)||(82943-83243)
[»] chr1 (8 HSPs)
chr1 (45-223)||(8113786-8113964)
chr1 (6-210)||(47974931-47975135)
chr1 (6-214)||(24765233-24765441)
chr1 (16-111)||(125285-125380)
chr1 (1-86)||(23894573-23894658)
chr1 (289-353)||(47974735-47974799)
chr1 (6-77)||(20010614-20010685)
chr1 (40-135)||(325836-325932)
[»] chr8 (4 HSPs)
chr8 (6-210)||(10289570-10289774)
chr8 (6-210)||(43266157-43266361)
chr8 (302-353)||(10289919-10289970)
chr8 (302-343)||(43265960-43266001)
[»] chr2 (6 HSPs)
chr2 (6-210)||(1658657-1658861)
chr2 (6-86)||(38432105-38432185)
chr2 (302-353)||(1659019-1659070)
chr2 (1-92)||(22710247-22710338)
chr2 (69-129)||(8148771-8148831)
chr2 (69-129)||(8153395-8153455)
[»] chr3 (6 HSPs)
chr3 (6-210)||(48663868-48664072)
chr3 (6-210)||(4100627-4100831)
chr3 (47-210)||(28160476-28160639)
chr3 (302-353)||(28160757-28160808)
chr3 (89-135)||(16900498-16900544)
chr3 (75-131)||(2994023-2994079)
[»] chr4 (1 HSPs)
chr4 (39-135)||(11057097-11057194)
[»] chr6 (1 HSPs)
chr6 (39-135)||(5319528-5319625)


Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 362
Target Start/End: Complemental strand, 4554830 - 4554469
Alignment:
Q  1 cgatcgcggctgaagacagcgtagcgcgtcagaacgtgaccgagtcgcgcgttaagcaaaagcggaacaaaaccgggtttcacggctgctttacatggag 100  Q
    |||||||||||||| ||||| |||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||    
T  4554830 cgatcgcggctgaaaacagcctagc-cgtcagaacgcgaccgagtcgcgcgttaggcaaaagcggaacaaaaccgggtttcgcggccgctttacatggag 4554732  T
Q  101 cggtagcgggttaagtcgcccgcttttccgggtcgaaacgaaattacgaaattatccctcacttaagtaacgttagaagggttaattttgtcattttcaa 200  Q
     |||||||||| || || ||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4554731 tggtagcgggtcaaatcacccgcttttccggttcgaaacgaaattatggaattatccctcacttaagtaacgttagaagggttaattttgtcattttcaa 4554632  T
Q  201 agccctattttctttcatccatttccatcgtagact--agagaacacaaccgcttcttctcttcattcaatcgtacatagcaaaacaacacttcacttca 298  Q
    ||||||||||||||||||||| ||||||||||||||  |||||||||| |||||||||||||||||||| ||||||| |||||||||||| ||| | |||    
T  4554631 agccctattttctttcatcca-ttccatcgtagactacagagaacacagccgcttcttctcttcattcattcgtacagagcaaaacaacatttcgcctca 4554533  T
Q  299 tctcttcatctctcagctgctcagatctttcacctcatccttcattccatatctctgctcctac 362  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||    
T  4554532 tctcttcatctctcagctgctcagatctttcacctcatccatcattccatatctcagctgctac 4554469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 37616821 - 37617053
Alignment:
Q  1 cgatcgcggctgaagacagcgtagcgcgtcagaacgtgaccgagtcgcgcgttaagcaaaagcggaacaaaaccgggtttcacggctgctttacatggag 100  Q
    |||||||||||||| ||||| |||||||| |||||| |||||  ||||| |||| | ||||||||  |||||||||||||| |||| ||||||| |||||    
T  37616821 cgatcgcggctgaaaacagcctagcgcgttagaacgcgaccgcatcgcgtgttagggaaaagcggtccaaaaccgggtttcgcggccgctttacgtggag 37616920  T
Q  101 cggtagcgggttaagtcgcccgcttttccgggtcgaaacgaaattacgaaattatccctcacttaagtaacgttagaagggttaattttgtcattttcaa 200  Q
    ||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37616921 cggtagcgggtcaaatcgcccacttttccgggtcgaaacgaaattacgaaattatccctcacttaagtaacgttagaagggttaattttgtcattttcaa 37617020  T
Q  201 agccctattttctttcatccatttccatcgtaga 234  Q
    ||||||||||||||||||||| ||||||||||||    
T  37617021 agccctattttctttcatcca-ttccatcgtaga 37617053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 36829025 - 36828794
Alignment:
Q  1 cgatcgcggctgaagacagcgtagcgcgtcagaacgtgaccgagtcgcgcgttaagcaaaagcggaacaaaaccgggtttcacggctgctttacatggag 100  Q
    |||||||||||||| ||||| |||||||| ||| || |||||  |||||||||| | ||||||||  |||||||||||||| |||| |||||||||||||    
T  36829025 cgatcgcggctgaaaacagcctagcgcgttagatcgcgaccgcatcgcgcgttagggaaaagcggtccaaaaccgggtttcgcggccgctttacatggag 36828926  T
Q  101 cggtagcgggttaagtcgcccgcttttccgggtcgaaacgaaattacgaaattatccctcacttaagtaacgttagaagggttaattttgtcattttcaa 200  Q
    ||||||||||| || |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36828925 cggtagcgggtcaaatcgcccgcttttccaggtcgaa-cgaaattacgaaattatccctcacttaagtaacgttagaagggttaattttgtcattttcaa 36828827  T
Q  201 agccctattttctttcatccatttccatcgtaga 234  Q
    || |||||||||||||||||| ||||||||||||    
T  36828826 agtcctattttctttcatcca-ttccatcgtaga 36828794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 6 - 201
Target Start/End: Original strand, 43282672 - 43282867
Alignment:
Q  6 gcggctgaagacagcgtagcgcgtcagaacgtgaccgagtcgcgcgttaagcaaaagcggaacaaaaccgggtttcacggctgctttacatggagcggta 105  Q
    ||||||||| ||||| ||||||||||||||| |||||  |||||||||| ||||||||||   ||||||||||||| |||||||||| | |||||||| |    
T  43282672 gcggctgaaaacagcctagcgcgtcagaacgcgaccgcatcgcgcgttaggcaaaagcggctgaaaaccgggtttcgcggctgcttttcgtggagcggga 43282771  T
Q  106 gcgggt-taagtcgcccgcttttccgggtcgaaacgaaattacgaaattatccctcacttaagtaacgttagaagggttaattttgtcattttcaaa 201  Q
    |||||| |||  ||  ||| ||||||||||||| |||||||||  ||||| ||||||||||||| || ||||||||||||||||||| |||||||||    
T  43282772 gcgggtctaacgcg-gcgcgtttccgggtcgaagcgaaattacagaattacccctcacttaagtgacattagaagggttaattttgtaattttcaaa 43282867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 6 - 210
Target Start/End: Original strand, 4968100 - 4968304
Alignment:
Q  6 gcggctgaagacagcgtagcgcgtcagaacgtgaccgagtcgcgcgttaagcaaaagcggaacaaaaccgggtttcacggctgctttacatggagcggta 105  Q
    ||||||||| ||||| |||||| |||||||| |||||  |||||||||| ||||||||||   ||||||||||||| |||| ||||| | |||||| | |    
T  4968100 gcggctgaaaacagcctagcgcatcagaacgcgaccgcatcgcgcgttaggcaaaagcggctgaaaaccgggtttcgcggccgcttttcgtggagctgga 4968199  T
Q  106 gcgggt-taagtcgcccgcttttccgggtcgaaacgaaattacgaaattatccctcacttaagtaacgttagaagggttaattttgtcattttcaaagcc 204  Q
    |||||| |||  || | || ||||||||||||| |||||||||  ||||| ||||||||||||| || ||||||||||||||||||| ||||||||| ||    
T  4968200 gcgggtctaacgcggc-gcgtttccgggtcgaagcgaaattacagaattacccctcacttaagtgacattagaagggttaattttgtaattttcaaaacc 4968298  T
Q  205 ctattt 210  Q
    ||||||    
T  4968299 ctattt 4968304  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 69 - 135
Target Start/End: Complemental strand, 18713292 - 18713225
Alignment:
Q  69 aaaaccgggtttcacggctgc-tttacatggagcggtagcgggttaagtcgcccgcttttccgggtcg 135  Q
    |||| |||||||| |||| || ||||| |||||||| ||||||| || ||||||||||||||||||||    
T  18713292 aaaagcgggtttcgcggccgcctttacctggagcgggagcgggtcaaatcgcccgcttttccgggtcg 18713225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 311
Target Start/End: Original strand, 37617094 - 37617131
Alignment:
Q  274 catagcaaaacaacacttcacttcatctcttcatctct 311  Q
    ||| ||||||||||||||||| ||||||||||||||||    
T  37617094 catcgcaaaacaacacttcacctcatctcttcatctct 37617131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 148; Significance: 5e-78; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 35228291 - 35228096
Alignment:
Q  1 cgatcgcggctgaagacagcgtagcgcgtcagaacgtgaccgagtcgcgcgttaagcaaaagcggaacaaaaccgggtttcacggctgctttacatggag 100  Q
    |||||||||||||| ||||| ||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||| | || |||||||||||||    
T  35228291 cgatcgcggctgaaaacagcctagcgcgtcagaacgcgatcgagtcgcgcattaagcaaaagcggaacaaaaccgggtttcgcagccgctttacatggag 35228192  T
Q  101 cggtagcgggttaagtcgcccgcttttccgggtcgaaacgaaattacgaaattatccctcacttaagtaacgttagaagggttaattttgtcattt 196  Q
    ||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  35228191 cggtagctggtcaagtcgcccgcttttccgggtcgaaacgaaattacggaattatccctcacttatgtaacgttagaagggttaattttgtcattt 35228096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 268 - 353
Target Start/End: Original strand, 35228346 - 35228431
Alignment:
Q  268 atcgtacatagcaaaacaacacttcacttcatctcttcatctctcagctgctcagatctttcacctcatccttcattccatatctc 353  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  35228346 atcgtacatagcaaaacaacacttcacttcatctcttcatctctcagctgctcagatctttcaccttatccatcattccatatctc 35228431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 33672137 - 33672346
Alignment:
Q  1 cgatcgcggctgaagacagcgtagcgcgtcagaacgtgaccgagtcgcgcgttaagcaaaagcggaacaaaaccgggtttcacggctgctttacatg-ga 99  Q
    ||||||| |||||| ||||| ||||||||||||||| |||||  |||||||||| ||||||||||   ||||||||||||| |||| |||||   |  ||    
T  33672137 cgatcgctgctgaaaacagcctagcgcgtcagaacgcgaccgcatcgcgcgttaggcaaaagcggctgaaaaccgggtttcgcggccgctttttgttaga 33672236  T
Q  100 gcggtagcgggt-taagtcgcccgcttttccgggtcgaaacgaaattacgaaattatccctcacttaagtaacgttagaagggttaattttgtcattttc 198  Q
    |||| || |||| |||  || | || ||||||||| ||| |||||||||  ||||| |||||||| |||| || ||||||||||||||||||| ||||||    
T  33672237 gcgggagtgggtctaacgcggc-gcgtttccgggttgaagcgaaattacataattacccctcact-aagtgacattagaagggttaattttgtaattttc 33672334  T
Q  199 aaagccctattt 210  Q
    ||||||||||||    
T  33672335 aaagccctattt 33672346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 6 - 86
Target Start/End: Complemental strand, 21286196 - 21286116
Alignment:
Q  6 gcggctgaagacagcgtagcgcgtcagaacgtgaccgagtcgcgcgttaagcaaaagcggaacaaaaccgggtttcacggc 86  Q
    ||||||||| ||||| |||||||||| |||| ||||||||||||||||| ||||||||||||| |||||||||||| ||||    
T  21286196 gcggctgaaaacagcctagcgcgtcaaaacgcgaccgagtcgcgcgttaggcaaaagcggaacgaaaccgggtttcgcggc 21286116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 302 - 353
Target Start/End: Original strand, 33672504 - 33672555
Alignment:
Q  302 cttcatctctcagctgctcagatctttcacctcatccttcattccatatctc 353  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  33672504 cttcatctctcagctgctcagatctttcacctcatccatcattccatatctc 33672555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 141; Significance: 7e-74; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 6 - 311
Target Start/End: Original strand, 82943 - 83243
Alignment:
Q  6 gcggctgaagacagcgtagcgcgtcagaacgtgaccgagtcgcgcgttaagcaaaagcggaacaaaaccgggtttcacggctgctttacatggagcggta 105  Q
    ||||| ||| ||||| |||||||| |||||| ||||   |||||||||| | ||||||||  |||||||||||||| |||  ||||||| ||||||||||    
T  82943 gcggcggaaaacagcctagcgcgttagaacgcgaccacatcgcgcgttagggaaaagcggtccaaaaccgggtttcgcgggcgctttacgtggagcggta 83042  T
Q  106 gcgggttaagtcgcccgcttttccgggtcgaaacgaaattacgaaattatccctcacttaagtaacgttagaagggttaattttgtcattttcaaagccc 205  Q
    |||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  83043 gcgggtcaaatcgcccgcttttccgggtcgaaacgaaataacgaaattatccctcacttaagtaacgttagaagggttaattttgtcattttcaaaaccc 83142  T
Q  206 tattttctttcatccatttccatcgtagactagagaacacaaccgcttcttctcttca------ttcaatcgtacatagcaaaacaacacttcacttcat 299  Q
    |||||||||||||||||| ||||||||||       ||||| |||||||||||||||       |||| ||   ||||||||||||||||||||  ||||    
T  83143 tattttctttcatccatt-ccatcgtaga-------acacagccgcttcttctcttctcttctcttcattc---catagcaaaacaacacttcatctcat 83231  T
Q  300 ctcttcatctct 311  Q
    ||||||||||||    
T  83232 ctcttcatctct 83243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 135; Significance: 3e-70; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 45 - 223
Target Start/End: Original strand, 8113786 - 8113964
Alignment:
Q  45 tcgcgcgttaagcaaaagcggaacaaaaccgggtttcacggctgctttacatggagcggtagcgggttaagtcgcccgcttttccgggtcgaaacgaaat 144  Q
    |||||||||| | |||| |||  |||||| ||||||| |||| |||||||||||||||||||||||| || |||||||||||||||| ||||||||||||    
T  8113786 tcgcgcgttagggaaaaacggtccaaaactgggtttcgcggccgctttacatggagcggtagcgggtcaaatcgcccgcttttccggatcgaaacgaaat 8113885  T
Q  145 tacgaaattatccctcacttaagtaacgttagaagggttaattttgtcattttcaaagccctattttctttcatccatt 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8113886 tacgaaattatccctcacttaagtaacgttagaagggttaattttgtcattttcaaagccctattttctttcatccatt 8113964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 6 - 210
Target Start/End: Complemental strand, 47975135 - 47974931
Alignment:
Q  6 gcggctgaagacagcgtagcgcgtcagaacgtgaccgagtcgcgcgttaagcaaaagcggaacaaaaccgggtttcacggctgctttacatggagcggta 105  Q
    ||||||||| ||||| ||||||||||||||| |||||  |||||||||| ||||||||||   ||||||||||||| |||| ||||| | |||||||| |    
T  47975135 gcggctgaaaacagcctagcgcgtcagaacgcgaccgcatcgcgcgttaggcaaaagcggctgaaaaccgggtttcgcggccgcttttcgtggagcggga 47975036  T
Q  106 gcgggt-taagtcgcccgcttttccgggtcgaaacgaaattacgaaattatccctcacttaagtaacgttagaagggttaattttgtcattttcaaagcc 204  Q
    |||||| |||  || | || ||||||||||||| |||||||||  ||||| ||||||||||||| || ||||||||||||||||||| ||||||||||||    
T  47975035 gcgggtctaacgcggc-gcgtttccgggtcgaagcgaaattacagaattacccctcacttaagtgacattagaagggttaattttgtaattttcaaagcc 47974937  T
Q  205 ctattt 210  Q
    ||||||    
T  47974936 ctattt 47974931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 6 - 214
Target Start/End: Original strand, 24765233 - 24765441
Alignment:
Q  6 gcggctgaagacagcgtagcgcgtcagaacgtgaccgagtcgcgcgttaagcaaaagcggaacaaaaccgggtttcacggctgctttacatggagcggta 105  Q
    ||||||||| ||||| |||||||| |||||| |||||   ||||||||| ||||||||||| | ||||||| ||||  ||| ||||| | ||||||||||    
T  24765233 gcggctgaaaacagcctagcgcgttagaacgcgaccgcaacgcgcgttaggcaaaagcggacctaaaccggttttcgtggccgcttttcctggagcggta 24765332  T
Q  106 gcgggttaagtcgcccgcttttccgggtcgaaacgaaattacgaaattatccctcacttaagtaacgttagaagggttaattttgtcattttcaaagccc 205  Q
    |||||| || |||||||||||||||||||||    |||||||||||||  ||||||||||||| || |||| |||||||||||||| |||||| || |||    
T  24765333 gcgggtcaaatcgcccgcttttccgggtcgaccaaaaattacgaaattgcccctcacttaagtgacattagtagggttaattttgtaattttccaaaccc 24765432  T
Q  206 tattttctt 214  Q
    |||||||||    
T  24765433 tattttctt 24765441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 16 - 111
Target Start/End: Original strand, 125285 - 125380
Alignment:
Q  16 acagcgtagcgcgtcagaacgtgaccgagtcgcgcgttaagcaaaagcggaacaaaaccgggtttcacggctgctttacatggagcggtagcgggt 111  Q
    ||||| ||||||||||||||  |||||||||| |||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  125285 acagcctagcgcgtcagaactcgaccgagtcgtgcgttaggcaaaagcggaacaaaaccgggtttcgcggccgctttacatggagcggtagcgggt 125380  T

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Target: chr1; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 23894658 - 23894573
Alignment:
Q  1 cgatcgcggctgaagacagcgtagcgcgtcagaacgtgaccgagtcgcgcgttaagcaaaagcggaacaaaaccgggtttcacggc 86  Q
    |||||||||||||| ||||| ||||||||||||||| ||| ||||| ||||||| ||||||||||||| |||||||||||| ||||    
T  23894658 cgatcgcggctgaaaacagcctagcgcgtcagaacgcgactgagtcacgcgttaggcaaaagcggaacgaaaccgggtttcgcggc 23894573  T

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Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 289 - 353
Target Start/End: Complemental strand, 47974799 - 47974735
Alignment:
Q  289 cttcacttcatctcttcatctctcagctgctcagatctttcacctcatccttcattccatatctc 353  Q
    |||||||||||  | ||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  47974799 cttcacttcattccatcatctctcagctgctcagatctttcacctcatccatcattccatttctc 47974735  T

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Target: chr1; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 6 - 77
Target Start/End: Complemental strand, 20010685 - 20010614
Alignment:
Q  6 gcggctgaagacagcgtagcgcgtcagaacgtgaccgagtcgcgcgttaagcaaaagcggaacaaaaccggg 77  Q
    ||||||||| ||||| |||||||| |||||| ||||||||||||||||| ||||||||| | ||||||||||    
T  20010685 gcggctgaaaacagcctagcgcgttagaacgcgaccgagtcgcgcgttaggcaaaagcgcaccaaaaccggg 20010614  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 135
Target Start/End: Complemental strand, 325932 - 325836
Alignment:
Q  40 ccgagtcgcgcgttaagcaaaagcggaacaaaaccgggtttcacggctgc-tttacatggagcggtagcgggttaagtcgcccgcttttccgggtcg 135  Q
    |||| |||||||||| | ||||||||  ||| | |||||||| |||| || ||||| |||||||| ||||||| || ||||| ||||||||||||||    
T  325932 ccgattcgcgcgttagggaaaagcgggtcaatagcgggtttcgcggccgcctttacctggagcgggagcgggtcaaatcgcctgcttttccgggtcg 325836  T

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Target: chr8 (Bit Score: 105; Significance: 2e-52; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 6 - 210
Target Start/End: Original strand, 10289570 - 10289774
Alignment:
Q  6 gcggctgaagacagcgtagcgcgtcagaacgtgaccgagtcgcgcgttaagcaaaagcggaacaaaaccgggtttcacggctgctttacatggagcggta 105  Q
    |||| |||| ||||| |||||||| |||||| |||||   ||||||||| ||||||||||  | |||||||||||  |||| ||||| |||||||||| |    
T  10289570 gcggttgaaaacagcctagcgcgttagaacgcgaccgcaacgcgcgttaggcaaaagcggtcctaaaccgggttttgcggccgcttttcatggagcggga 10289669  T
Q  106 gcgggttaagtcgcccgcttttccgggtcgaaacgaaattacgaaattatccctcacttaagtaacgttagaagggttaattttgtcattttcaaagccc 205  Q
    |||||| || |||||||||||||||||||||||| ||||||| |||||| ||||||||||||| || ||||||||||||||||||| |||||||||||||    
T  10289670 gcgggtcaaatcgcccgcttttccgggtcgaaacaaaattacaaaattacccctcacttaagtgacattagaagggttaattttgtaattttcaaagccc 10289769  T
Q  206 tattt 210  Q
    |||||    
T  10289770 tattt 10289774  T

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Target: chr8; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 6 - 210
Target Start/End: Complemental strand, 43266361 - 43266157
Alignment:
Q  6 gcggctgaagacagcgtagcgcgtcagaacgtgaccgagtcgcgcgttaagcaaaagcggaacaaaaccgggtttcacggctgctttacatggagcggta 105  Q
    ||||||||| ||||| ||||||||||||||  |||||  |||||||||| ||||||||||   ||||||||||||| |||| ||||| | |||||||| |    
T  43266361 gcggctgaaaacagcctagcgcgtcagaacacgaccgcatcgcgcgttaggcaaaagcggctgaaaaccgggtttcgcggccgcttttcgtggagcggga 43266262  T
Q  106 gcgggt-taagtcgcccgcttttccgggtcgaaacgaaattacgaaattatccctcacttaagtaacgttagaagggttaattttgtcattttcaaagcc 204  Q
    | |||| |||  || | || ||| ||||||||| |||||||||  ||||| ||||||||||||| || ||||||||||||||||||| ||||||||||||    
T  43266261 gtgggtctaacgcggc-gcgttttcgggtcgaagcgaaattacagaattacccctcacttaagtgacattagaagggttaattttgtaattttcaaagcc 43266163  T
Q  205 ctattt 210  Q
    ||||||    
T  43266162 ctattt 43266157  T

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Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 302 - 353
Target Start/End: Original strand, 10289919 - 10289970
Alignment:
Q  302 cttcatctctcagctgctcagatctttcacctcatccttcattccatatctc 353  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  10289919 cttcatctctcagctgctcagatctttcacctcatccatcattccatatctc 10289970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 302 - 343
Target Start/End: Complemental strand, 43266001 - 43265960
Alignment:
Q  302 cttcatctctcagctgctcagatctttcacctcatccttcat 343  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  43266001 cttcatctctcagctgctcagatctttcacctcatccatcat 43265960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 90; Significance: 2e-43; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 6 - 210
Target Start/End: Original strand, 1658657 - 1658861
Alignment:
Q  6 gcggctgaagacagcgtagcgcgtcagaacgtgaccgagtcgcgcgttaagcaaaagcggaacaaaaccgggtttcacggctgctttacatggagcggta 105  Q
    ||||||||| ||||| ||||||||||||||| |||||  |||||||||| ||||||||||   ||||||||||||| |||| ||||| | |||||||| |    
T  1658657 gcggctgaaaacagcctagcgcgtcagaacgcgaccgcatcgcgcgttaggcaaaagcggctgaaaaccgggtttcgcggccgcttttcgtggagcggga 1658756  T
Q  106 gcgggt-taagtcgcccgcttttccgggtcgaaacgaaattacgaaattatccctcacttaagtaacgttagaagggttaattttgtcattttcaaagcc 204  Q
    |||||| |||  || | || ||||||||||||| |||||||||  ||||| ||||||||||||| || ||||||||||||||||||| ||||||||||||    
T  1658757 gcgggtctaacgcggc-gcgtttccgggtcgaagcgaaattacagaattacccctcacttaagtgacattagaagggttaattttgtaattttcaaagcc 1658855  T
Q  205 ctattt 210  Q
    ||||||    
T  1658856 ctattt 1658861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 6 - 86
Target Start/End: Original strand, 38432105 - 38432185
Alignment:
Q  6 gcggctgaagacagcgtagcgcgtcagaacgtgaccgagtcgcgcgttaagcaaaagcggaacaaaaccgggtttcacggc 86  Q
    ||||||||| ||||| ||||||||||||||| |||||||||||||||||  ||||||||||||||||| ||||||| ||||    
T  38432105 gcggctgaaaacagcctagcgcgtcagaacgcgaccgagtcgcgcgttagacaaaagcggaacaaaacggggtttcgcggc 38432185  T

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Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 302 - 353
Target Start/End: Original strand, 1659019 - 1659070
Alignment:
Q  302 cttcatctctcagctgctcagatctttcacctcatccttcattccatatctc 353  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  1659019 cttcatctctcagctgctcagatctttcacctcatccatcattccatatctc 1659070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 22710247 - 22710338
Alignment:
Q  1 cgatcgcggctgaagacagcgtagcgcgtcagaacgtgaccgagtcgcgcgttaagcaaaagcggaacaaaaccgggtttcacggctgcttt 92  Q
    |||||||||||||| ||||| ||||||||||||||| |||||   ||||||||| |||| |||||   ||||||||||||| |||| |||||    
T  22710247 cgatcgcggctgaaaacagcctagcgcgtcagaacgcgaccgcaacgcgcgttaggcaatagcgggcgaaaaccgggtttcgcggccgcttt 22710338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 129
Target Start/End: Original strand, 8148771 - 8148831
Alignment:
Q  69 aaaaccgggtttcacggctgctttacatggagcggtagcgggttaagtcgcccgcttttcc 129  Q
    |||| ||| |||| |||| |||||||||||||||||||||||| || |||||| |||||||    
T  8148771 aaaagcggatttcgcggccgctttacatggagcggtagcgggtcaaatcgcccacttttcc 8148831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 129
Target Start/End: Original strand, 8153395 - 8153455
Alignment:
Q  69 aaaaccgggtttcacggctgctttacatggagcggtagcgggttaagtcgcccgcttttcc 129  Q
    |||| ||| |||| |||| |||||||||||||||||||||||| || |||||| |||||||    
T  8153395 aaaagcggatttcgcggccgctttacatggagcggtagcgggtcaaatcgcccacttttcc 8153455  T

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Target: chr3 (Bit Score: 86; Significance: 5e-41; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 6 - 210
Target Start/End: Complemental strand, 48664072 - 48663868
Alignment:
Q  6 gcggctgaagacagcgtagcgcgtcagaacgtgaccgagtcgcgcgttaagcaaaagcggaacaaaaccgggtttcacggctgctttacatggagcggta 105  Q
    ||||||||| ||||| ||||||||||||||| |||||  |||||||||| ||||||||||   ||||||||||||| |||| ||||| | |||||||| |    
T  48664072 gcggctgaaaacagcctagcgcgtcagaacgcgaccgcatcgcgcgttaggcaaaagcggctgaaaaccgggtttcgcggccgcttttcgtggagcggga 48663973  T
Q  106 gcgggt-taagtcgcccgcttttccgggtcgaaacgaaattacgaaattatccctcacttaagtaacgttagaagggttaattttgtcattttcaaagcc 204  Q
    |||||| |||  || | || ||||||||||||| |||||||||  ||||| ||||||||||||| || ||||||||||||||||||| ||||||||| ||    
T  48663972 gcgggtctaacgcggc-gcgtttccgggtcgaagcgaaattacagaattacccctcacttaagtgacattagaagggttaattttgtaattttcaaaacc 48663874  T
Q  205 ctattt 210  Q
    ||||||    
T  48663873 ctattt 48663868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 6 - 210
Target Start/End: Original strand, 4100627 - 4100831
Alignment:
Q  6 gcggctgaagacagcgtagcgcgtcagaacgtgaccgagtcgcgcgttaagcaaaagcggaacaaaaccgggtttcacggctgctttacatggagcggta 105  Q
    ||||||||| ||||| ||||||||||||||| |||||  |||||||||| |||||||| |   ||||||||||||| |||| ||||| | |||||||| |    
T  4100627 gcggctgaaaacagcctagcgcgtcagaacgcgaccgcatcgcgcgttaggcaaaagcagctgaaaaccgggtttcgcggccgcttttcgtggagcggga 4100726  T
Q  106 gcgggt-taagtcgcccgcttttccgggtcgaaacgaaattacgaaattatccctcacttaagtaacgttagaagggttaattttgtcattttcaaagcc 204  Q
    |||||| |||  || | || ||||||||||||| |||||||||  ||||| ||||||||||||| || |||||||| |||||||||| ||||||||| ||    
T  4100727 gcgggtctaacgcggc-gcgtttccgggtcgaagcgaaattacagaattacccctcacttaagtgacattagaaggtttaattttgtaattttcaaaacc 4100825  T
Q  205 ctattt 210  Q
    ||||||    
T  4100826 ctattt 4100831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 47 - 210
Target Start/End: Original strand, 28160476 - 28160639
Alignment:
Q  47 gcgcgttaagcaaaagcggaacaaaaccgggtttcacggctgctttacatggagcggtagcgggttaagtcgcc-cgcttttccgggtcgaaacgaaatt 145  Q
    |||||||| ||||||||||   ||||||||||||  |||| ||||| | |||||||| |||||||  || |||  | | ||||||||||||| |||||||    
T  28160476 gcgcgttaggcaaaagcggctgaaaaccgggttttgcggccgcttttcgtggagcgggagcgggtctag-cgcggcacgtttccgggtcgaagcgaaatt 28160574  T
Q  146 acgaaattatccctcacttaagtaacgttagaagggttaattttgtcattttcaaagccctattt 210  Q
    ||  ||||| ||||||||||||| || |||||| |||||||||||| ||||||||||||||||||    
T  28160575 acagaattacccctcacttaagtgacattagaaaggttaattttgtaattttcaaagccctattt 28160639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 302 - 353
Target Start/End: Original strand, 28160757 - 28160808
Alignment:
Q  302 cttcatctctcagctgctcagatctttcacctcatccttcattccatatctc 353  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  28160757 cttcatctctcagctgctcagatctttcacctcatccatcattccatatctc 28160808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 135
Target Start/End: Complemental strand, 16900544 - 16900498
Alignment:
Q  89 ctttacatggagcggtagcgggttaagtcgcccgcttttccgggtcg 135  Q
    |||||| |||||||| ||||||| || ||||||||||||||||||||    
T  16900544 ctttacttggagcgggagcgggtcaaatcgcccgcttttccgggtcg 16900498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 131
Target Start/End: Complemental strand, 2994079 - 2994023
Alignment:
Q  75 gggtttcacggctgctttacatggagcggtagcgggttaagtcgcccgcttttccgg 131  Q
    ||||||| |||| ||||||||||||  |||||||||| || ||||| ||||||||||    
T  2994079 gggtttcgcggccgctttacatggattggtagcgggtcaaatcgccagcttttccgg 2994023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 39 - 135
Target Start/End: Complemental strand, 11057194 - 11057097
Alignment:
Q  39 accgagtcgcgcgttaagcaaaagcggaacaaaaccgggtttcacggctgc-tttacatggagcggtagcgggttaagtcgcccgcttttccgggtcg 135  Q
    ||||| |||||||||| | ||||||||  ||| | |||||||| |||| |  ||||| |||||||| ||||||| || ||||||||||||||||||||    
T  11057194 accgattcgcgcgttagggaaaagcgggtcaatagcgggtttcgcggccgggtttacctggagcgggagcgggtcaaatcgcccgcttttccgggtcg 11057097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 135
Target Start/End: Original strand, 5319528 - 5319625
Alignment:
Q  39 accgagtcgcgcgttaagcaaaagcggaacaaaaccgggtttcacggctgc-tttacatggagcggtagcgggttaagtcgcccgcttttccgggtcg 135  Q
    ||||| |||||||||| | ||||||||  | | | |||||||| |||| || ||||| |||||||| ||||||| || ||||| ||||||||||||||    
T  5319528 accgattcgcgcgttagggaaaagcgggtccatagcgggtttcgcggccgcctttacctggagcgggagcgggtcaaatcgccagcttttccgggtcg 5319625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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