View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21205_low_33 (Length: 329)

Name: NF21205_low_33
Description: NF21205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21205_low_33
NF21205_low_33
[»] chr3 (6 HSPs)
chr3 (9-329)||(24638045-24638365)
chr3 (9-329)||(24646978-24647294)
chr3 (19-146)||(20620670-20620798)
chr3 (100-167)||(20619706-20619773)
chr3 (19-108)||(48099378-48099468)
chr3 (256-324)||(24716648-24716712)
[»] scaffold0197 (2 HSPs)
scaffold0197 (100-167)||(7237-7304)
scaffold0197 (185-241)||(7339-7395)
[»] chr8 (3 HSPs)
chr8 (106-167)||(15935270-15935331)
chr8 (41-108)||(40270352-40270420)
chr8 (41-107)||(19183626-19183693)
[»] scaffold0009 (1 HSPs)
scaffold0009 (41-108)||(32119-32187)
[»] chr1 (5 HSPs)
chr1 (19-108)||(9932096-9932186)
chr1 (19-108)||(44387578-44387668)
chr1 (41-108)||(24210233-24210301)
chr1 (41-97)||(45030010-45030066)
chr1 (41-97)||(45034861-45034917)
[»] scaffold0936 (1 HSPs)
scaffold0936 (19-108)||(3569-3658)
[»] scaffold0655 (1 HSPs)
scaffold0655 (41-97)||(5642-5698)
[»] scaffold0134 (1 HSPs)
scaffold0134 (41-108)||(41037-41105)
[»] chr6 (3 HSPs)
chr6 (41-108)||(16594886-16594954)
chr6 (41-97)||(33166251-33166307)
chr6 (94-140)||(21875304-21875350)
[»] chr5 (1 HSPs)
chr5 (61-108)||(1545864-1545912)
[»] chr2 (1 HSPs)
chr2 (63-108)||(40623336-40623381)


Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-179; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 9 - 329
Target Start/End: Complemental strand, 24638365 - 24638045
Alignment:
Q  9 gacatcatcacaaaggcctactttgagttcattttgatgattttcataccattctaagcgtccgtaaacctcccgcttcaactgcggggtgtgatagaat 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24638365 gacatcatcacaaaggcctactttgagttcattttgatgattttcagaccattctaagcgtccgtaaacctcccgcttcaactgcggggtgtgatagaat 24638266  T
Q  109 gtttgactttatgtaattatgttagtagttatgttggtaattattttgtaattactctcatgtttgactccacttgtaactgtatatatactcttgatca 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24638265 gtttgactttatgtaattatgttagtagttatgttggtaattattttgtaattactctcatgtttgactccacttgtaactgtatatatactcttgatca 24638166  T
Q  209 ttacaaataaaattcacggattgatttcctttaattagtacctccttttgtaattcaagtctgcaagcaacagattaattcaagtatgctcagttacact 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24638165 ttacaaataaaattcacggattgatttcctttaattagtacctccttttgtaattcaagtctgcaagcaacagattaattcaagtatgctcagttacact 24638066  T
Q  309 gtttgcatcagctagagcctc 329  Q
    |||||||||||||||||||||    
T  24638065 gtttgcatcagctagagcctc 24638045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 9 - 329
Target Start/End: Complemental strand, 24647294 - 24646978
Alignment:
Q  9 gacatcatcacaaaggcctactttgagttcattttgatgattttcataccattctaagcgtccgtaaacctcccgcttcaactgcggggtgtgatagaat 108  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24647294 gacatcttcacaaaggcctactttgagttctttttgatgattttcagaccattctaagcgtccgtaaacctcccgcttcaactgcggggtgtgatagaat 24647195  T
Q  109 gtttgactttatgtaattatgttagtagttatgttggtaattattttgtaattactctcatgtttgactccacttgtaactgtatatatactcttgatca 208  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24647194 gtttgactttatgtaattatgttagtagctatgttggtaattattttgtaattactctcatgtttgactccacttgtaactgtatatatactcttgatca 24647095  T
Q  209 ttacaaataaaattcacggattgatttcctttaattagtacctccttttgtaattcaagtctgcaagcaacagattaattcaagtatgctcagttacact 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||    
T  24647094 ttacaaataaaattcacggattgatttcctttaattagtacctccttttgtaattcaagtctgcaagcaacag----attcaagtatgctcagttacact 24646999  T
Q  309 gtttgcatcagctagagcctc 329  Q
    |||||||||||||||||||||    
T  24646998 gtttgcatcagctagagcctc 24646978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 19 - 146
Target Start/End: Original strand, 20620670 - 20620798
Alignment:
Q  19 caaaggcctactttgagttcattttgatgattttcataccattctaagcgtccgtaaacctcccgcttcaactgcgg-ggtgtgatagaatgtttgactt 117  Q
    |||||||| || | |||||| ||||||| ||||||  |||| | ||||||| ||| ||||||||||||| ||| ||| ||| ||||||||||||||||||    
T  20620670 caaaggccaacctcgagttctttttgataattttcgaaccagtttaagcgttcgtgaacctcccgcttcgacttcggaggtatgatagaatgtttgactt 20620769  T
Q  118 tatgtaattatgttagtagttatgttggt 146  Q
    |||||||||||||||||| ||||||||||    
T  20620770 tatgtaattatgttagtaattatgttggt 20620798  T

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Target: chr3; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 100 - 167
Target Start/End: Original strand, 20619706 - 20619773
Alignment:
Q  100 tgatagaatgtttgactttatgtaattatgttagtagttatgttggtaattattttgtaattactctc 167  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||| |||||||| |||||||||||    
T  20619706 tgatagaatgtttgactttatgtaattatgttagtatttacgttggttattattttttaattactctc 20619773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 48099468 - 48099378
Alignment:
Q  19 caaaggcctactttgagttcattttgatgattttcataccattctaagcgtccgtaaacctcccgcttcaactgc-ggggtgtgatagaat 108  Q
    |||||||||||   | |||| ||||||||||||||  |||| |||||| || ||| ||||||||||||| ||||| |||||||||||||||    
T  48099468 caaaggcctaccgcgtgttctttttgatgattttcgaaccagtctaagtgttcgtgaacctcccgcttcgactgcgggggtgtgatagaat 48099378  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 324
Target Start/End: Complemental strand, 24716712 - 24716648
Alignment:
Q  256 ttgtaattcaagtctgcaagcaacagattaattcaagtatgctcagttacactgtttgcatcagctaga 324  Q
    |||||||||||||||||||| ||||||||    |||  ||||||||| ||| |||||||||||||||||    
T  24716712 ttgtaattcaagtctgcaaggaacagatt----caataatgctcagtgacattgtttgcatcagctaga 24716648  T

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Target: scaffold0197 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 100 - 167
Target Start/End: Original strand, 7237 - 7304
Alignment:
Q  100 tgatagaatgtttgactttatgtaattatgttagtagttatgttggtaattattttgtaattactctc 167  Q
    |||||||||||||||| ||||||||||||||||||| |||||||||| |||| |||||||||||||||    
T  7237 tgatagaatgtttgaccttatgtaattatgttagtaattatgttggttattactttgtaattactctc 7304  T

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Target: scaffold0197; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 185 - 241
Target Start/End: Original strand, 7339 - 7395
Alignment:
Q  185 taactgtatatatactcttgatcattacaaataaaattcacggattgatttccttta 241  Q
    ||||| |||||||||||||||||||||  ||| ||||||||| ||||||||||||||    
T  7339 taactatatatatactcttgatcattatcaatgaaattcacgaattgatttccttta 7395  T

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Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 106 - 167
Target Start/End: Complemental strand, 15935331 - 15935270
Alignment:
Q  106 aatgtttgactttatgtaattatgttagtagttatgttggtaattattttgtaattactctc 167  Q
    ||||||||||||||||||||||||||| || |||||||||| ||||||||||||| ||||||    
T  15935331 aatgtttgactttatgtaattatgttactaattatgttggttattattttgtaatcactctc 15935270  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 41 - 108
Target Start/End: Complemental strand, 40270420 - 40270352
Alignment:
Q  41 tttgatgattttcataccattctaagcgtccgtaaacctcccgcttcaactgc-ggggtgtgatagaat 108  Q
    |||||||||||||  |||| ||| ||||||||| ||||||||||||| ||||| |||||||||||||||    
T  40270420 tttgatgattttcggaccagtcttagcgtccgtgaacctcccgcttcgactgcgggggtgtgatagaat 40270352  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 41 - 107
Target Start/End: Original strand, 19183626 - 19183693
Alignment:
Q  41 tttgatgattttcataccattctaagcgtccgtaaacctcccgcttcaactgc-ggggtgtgatagaa 107  Q
    |||||||||||||  |||| |||||||||  || ||||||||||||| ||||| ||||||||||||||    
T  19183626 tttgatgattttcggaccagtctaagcgtttgtgaacctcccgcttcgactgcgggggtgtgatagaa 19183693  T

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Target: scaffold0009 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 41 - 108
Target Start/End: Original strand, 32119 - 32187
Alignment:
Q  41 tttgatgattttcataccattctaagcgtccgtaaacctcccgcttcaactgc-ggggtgtgatagaat 108  Q
    |||||||||||||  |||| ||| ||||||||| ||||||||||||| ||||| |||||||||||||||    
T  32119 tttgatgattttcggaccagtcttagcgtccgtgaacctcccgcttcgactgcgggggtgtgatagaat 32187  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 9932186 - 9932096
Alignment:
Q  19 caaaggcctactttgagttcattttgatgattttcataccattctaagcgtccgtaaacctcccgcttcaactgc-ggggtgtgatagaat 108  Q
    |||||||||||   | |||| ||||||||||||||  |||| |||||| || ||| ||||||||||||| ||||| |||||||||||||||    
T  9932186 caaaggcctaccgcgtgttctttttgatgattttcgaaccagtctaagtgttcgtgaacctcccgcttcgactgcgggggtgtgatagaat 9932096  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 44387578 - 44387668
Alignment:
Q  19 caaaggcctactttgagttcattttgatgattttcataccattctaagcgtccgtaaacctcccgcttcaactgc-ggggtgtgatagaat 108  Q
    ||||| ||||| | |||||| |||||||||||| |  |||| |||||||| | || ||||||||||||| ||||| |||||||||||||||    
T  44387578 caaagtcctacctcgagttctttttgatgatttccgaaccagtctaagcgcctgtgaacctcccgcttcgactgcgggggtgtgatagaat 44387668  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 108
Target Start/End: Original strand, 24210233 - 24210301
Alignment:
Q  41 tttgatgattttcataccattctaagcgtccgtaaacctcccgcttcaactgcggg-gtgtgatagaat 108  Q
    |||||||||||||  |||| ||| ||||||||| ||||||||||||| |||||||| || |||||||||    
T  24210233 tttgatgattttcggaccagtcttagcgtccgtgaacctcccgcttcgactgcgggagtctgatagaat 24210301  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 97
Target Start/End: Original strand, 45030010 - 45030066
Alignment:
Q  41 tttgatgattttcataccattctaagcgtccgtaaacctcccgcttcaactgcgggg 97  Q
    |||||||||||||  |||| ||| ||||||||| ||||||||||||| |||| ||||    
T  45030010 tttgatgattttcggaccagtctcagcgtccgtgaacctcccgcttcgactgtgggg 45030066  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 97
Target Start/End: Original strand, 45034861 - 45034917
Alignment:
Q  41 tttgatgattttcataccattctaagcgtccgtaaacctcccgcttcaactgcgggg 97  Q
    |||||||||||||  |||| ||| ||||||||| ||||||||||||| |||| ||||    
T  45034861 tttgatgattttcggaccagtctcagcgtccgtgaacctcccgcttcgactgtgggg 45034917  T

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Target: scaffold0936 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0936
Description:

Target: scaffold0936; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 3569 - 3658
Alignment:
Q  19 caaaggcctactttgagttcattttgatgattttcataccattctaagcgtccgtaaacctcccgcttcaactgcggggtgtgatagaat 108  Q
    ||||||||||| | |||||| |||||||||| ||   |||| | ||||||| ||| |||||||| |||| ||| ||||||||||||||||    
T  3569 caaaggcctacctcgagttctttttgatgatatttggaccagtataagcgttcgtgaacctccctcttcgactccggggtgtgatagaat 3658  T

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Target: scaffold0655 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0655
Description:

Target: scaffold0655; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 97
Target Start/End: Complemental strand, 5698 - 5642
Alignment:
Q  41 tttgatgattttcataccattctaagcgtccgtaaacctcccgcttcaactgcgggg 97  Q
    ||||||||||||   |||| ||||||||||||| ||||||||||||| |||||||||    
T  5698 tttgatgatttttggaccagtctaagcgtccgtgaacctcccgcttcgactgcgggg 5642  T

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Target: scaffold0134 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 108
Target Start/End: Original strand, 41037 - 41105
Alignment:
Q  41 tttgatgattttcataccattctaagcgtccgtaaacctcccgcttcaactgc-ggggtgtgatagaat 108  Q
    |||||||| ||||  |||| ||||||||||||| ||||||||||||| ||| | |||||||||||||||    
T  41037 tttgatgactttcggaccagtctaagcgtccgtgaacctcccgcttcgactacgggggtgtgatagaat 41105  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 108
Target Start/End: Original strand, 16594886 - 16594954
Alignment:
Q  41 tttgatgattttcataccattctaagcgtccgtaaacctcccgcttcaactgcg-gggtgtgatagaat 108  Q
    |||||||||||||  || | |||||| |||||| ||||||||||||| |||||| ||||||||||||||    
T  16594886 tttgatgattttcggactagtctaagtgtccgtgaacctcccgcttcgactgcgagggtgtgatagaat 16594954  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 97
Target Start/End: Original strand, 33166251 - 33166307
Alignment:
Q  41 tttgatgattttcataccattctaagcgtccgtaaacctcccgcttcaactgcgggg 97  Q
    |||||||||||||  |||| ||| ||||||||| ||||||||||||| |||||||||    
T  33166251 tttgatgattttcggaccagtctcagcgtccgtgaacctcccgcttcgactgcgggg 33166307  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 140
Target Start/End: Complemental strand, 21875350 - 21875304
Alignment:
Q  94 ggggtgtgatagaatgtttgactttatgtaattatgttagtagttat 140  Q
    ||||||||||| ||||||||||||| |||||||||||| ||| ||||    
T  21875350 ggggtgtgataaaatgtttgactttctgtaattatgttcgtaattat 21875304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 108
Target Start/End: Complemental strand, 1545912 - 1545864
Alignment:
Q  61 tctaagcgtccgtaaacctcccgcttcaactgcg-gggtgtgatagaat 108  Q
    ||||||||||||| ||||||||||||| |||||| ||||||||||||||    
T  1545912 tctaagcgtccgtgaacctcccgcttcgactgcgagggtgtgatagaat 1545864  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 108
Target Start/End: Original strand, 40623336 - 40623381
Alignment:
Q  63 taagcgtccgtaaacctcccgcttcaactgcggggtgtgatagaat 108  Q
    ||||||||||| |||||||| |||| ||| ||||||||||||||||    
T  40623336 taagcgtccgtgaacctcccccttcgactccggggtgtgatagaat 40623381  T

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