View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21205_low_35 (Length: 316)
Name: NF21205_low_35
Description: NF21205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21205_low_35 |
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Alignment Details
Target: chr6 (Bit Score: 293; Significance: 1e-164; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 32684632 - 32684324
Alignment:
| Q |
1 |
atcttatatagttgtagttttcgtctatgcaatcacgatctagctagttttcatcaatcttgagagggaatgttagttacaagctctccaactaagtata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32684632 |
atcttatatagttgtagttttcgtctatgcaatcacgatctagctagttttcatcaatcttgagagggaatgttagttacaagctctccaactaagtata |
32684533 |
T |
|
| Q |
101 |
ctgagatgtaagtttctttgccaactgttttatgatgtaacttgttcagcaagctatatgtcaatttctaaatgcttagttctttcattgaatacaatag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32684532 |
ctgagatgtaagtttctttgccaactgttttatgatgtaacttgttcagcaagctatatgtcaatttctaaatgcttagttctttcattgaataatatag |
32684433 |
T |
|
| Q |
201 |
atgttatgtaaatgacactttgactatcacaatataacgcaatgaggtcttgtgcttcgaagttctttacggtcattgtcaacctcctctttatattcag |
300 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32684432 |
atgttatgtaaatgacactttgactatcaaaatataacgcaatgaggtcttgtgcttcgaagttctttacggtcattgtcaacctcctctttatattcag |
32684333 |
T |
|
| Q |
301 |
cctttgatt |
309 |
Q |
| |
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|||| |||| |
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| T |
32684332 |
ccttggatt |
32684324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 32559791 - 32560082
Alignment:
| Q |
1 |
atcttatatagttgtagttttcgtctatgcaatcacgatctagctagttttcatcaatcttgagagggaatgttagttacaagctctccaactaagtata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
32559791 |
atcttatatagttgtagttttcgtctatgcaatcacgatctagctagttttcatcaatcttgagagggaatgttagttacaagctctctaactaagtata |
32559890 |
T |
|
| Q |
101 |
ctgagatgtaagtttctttgccaactgttttatgatgtaacttgttcagcaagctatatgtcaatttctaaatgcttagttctttcattgaatacaatag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32559891 |
ctgagatgtaagtttctttgccaactgttttatgatgtaacttattcagcaagctatatgtcaatttctaaatgcttagttctttcattgaatacaatgc |
32559990 |
T |
|
| Q |
201 |
atgttatgtaaatgacactttgactatcacaatataacgcaatgaggtcttgtgcttcgaagttctttacggtcattgtcaacctcctcttt |
292 |
Q |
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||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32559991 |
atgttatgtaaatgacactttcactatcacaatataacgcaacgaggtcttgtgcttcgaagttctttacggtcattgtcaacctcctcttt |
32560082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 255 - 304
Target Start/End: Complemental strand, 32692276 - 32692227
Alignment:
| Q |
255 |
cttcgaagttctttacggtcattgtcaacctcctctttatattcagcctt |
304 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
32692276 |
cttcaaagttctttacggtcattgtcaacctcctctttatattcaacctt |
32692227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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