View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21205_low_36 (Length: 309)
Name: NF21205_low_36
Description: NF21205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21205_low_36 |
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| [»] chr1 (10 HSPs) |
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| [»] scaffold0341 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 19 - 309
Target Start/End: Complemental strand, 47718197 - 47717907
Alignment:
| Q |
19 |
ctcttatggccaaaacaccgacaaagtaaacgccattggactctgcagaggagatgttaaacctgatgtttgccgcagtcgtctcaatgattcaagagtt |
118 |
Q |
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|||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||| |
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| T |
47718197 |
ctcttatggccaaaacactgacaaagtaaacgccgttggcctctgcagaggagatgttaaacctgacgtttgccgaagttgtctcaatgattcaagagtt |
47718098 |
T |
|
| Q |
119 |
cttctcacaaaactttgtccaaaccaaaaagaagcaattggttggtatgttgactgcatgttgcgttactcaaaccgatcaatattcggcgttatggaag |
218 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47718097 |
cttctcacaaaactttgtccaaaccaaaaagaagcgattggttggtatgttgactgcatgttgcgttactcaaaccgatcaatattcggcgttatggaag |
47717998 |
T |
|
| Q |
219 |
cttcaccttcatatttaaagtggaccttgaaaaatgcaaccgaggtggatcaatttaatcaagttcttgggaacttgatgaggaaactcaa |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47717997 |
cttcaccttcatatttaaagtggaccttgaaaaatgcaaccgaggtggatcaatttaatcaagttcttgggaacttgatgaggaaactcaa |
47717907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 20 - 306
Target Start/End: Complemental strand, 47760317 - 47760031
Alignment:
| Q |
20 |
tcttatggccaaaacaccgacaaagtaaacgccattggactctgcagaggagatgttaaacctgatgtttgccgcagtcgtctcaatgattcaagagttc |
119 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||| ||||||| ||||||||||||| |
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| T |
47760317 |
tcttatggccaaaacactgacaaagtaaacgccattggactctgtagaggagatgttaaacccgacgtttgccgcagttgtctcaacgattcaagagttc |
47760218 |
T |
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| Q |
120 |
ttctcacaaaactttgtccaaaccaaaaagaagcaattggttggtatgttgactgcatgttgcgttactcaaaccgatcaatattcggcgttatggaagc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47760217 |
ttctcacaaaactttgtccaaaccaaaaagaagcaattggttggtatgataactgcatgttgcgttactcaaaccgatcaatattcggcgttatggaagg |
47760118 |
T |
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| Q |
220 |
ttcaccttcatatttaaagtggaccttgaaaaatgcaaccgaggtggatcaatttaatcaagttcttgggaacttgatgaggaaact |
306 |
Q |
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|||||| | || | ||||| | | | |||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
47760117 |
ttcaccaaagttttatatgtggaacatatataatgtaacagaggtggatcaatttaaccaagttcttgggaacttgatgaggaaact |
47760031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 19 - 309
Target Start/End: Complemental strand, 47745986 - 47745696
Alignment:
| Q |
19 |
ctcttatggccaaaacaccgacaaagtaaacgccattggactctgcagaggagatgttaaacctgatgtttgccgcagtcgtctcaatgattcaagagtt |
118 |
Q |
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|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||| |||||||||||| |
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| T |
47745986 |
ctcttatggccaaaacactgataaagtaaacgccattggactctgcagaggagatgttaaacccgacctttgccgcagttgtctcaacgattcaagagtt |
47745887 |
T |
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| Q |
119 |
cttctcacaaaactttgtccaaaccaaaaagaagcaattggttggtatgttgactgcatgttgcgttactcaaaccgatcaatattcggcgttatggaag |
218 |
Q |
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|||||||||||||||||||||| |||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||| ||| ||||||| |
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| T |
47745886 |
cttctcacaaaactttgtccaacccaaaaagaagcaattagttggtatgataactgcatgttgcgttactcaaaccgatcaatatttggcattatggata |
47745787 |
T |
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| Q |
219 |
cttcaccttcatatttaaagtggaccttgaaaaatgcaaccgaggtggatcaatttaatcaagttcttgggaacttgatgaggaaactcaa |
309 |
Q |
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||||| |||||||| ||||||| | | ||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
47745786 |
cttcattttcatattataagtggaacaatagaaatgtaaccgatgtggctcaatttaatcaagttcttgggaacttgatgaggaaactcaa |
47745696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 19 - 306
Target Start/End: Complemental strand, 47713403 - 47713116
Alignment:
| Q |
19 |
ctcttatggccaaaacaccgacaaagtaaacgccattggactctgcagaggagatgttaaacctgatgtttgccgcagtcgtctcaatgattcaagagtt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47713403 |
ctcttatggccaaaacaccgacaaagtaaacgccattggactctgcagaggagatgttaaacctgatgtttgccgcagtcgtctcaatgattcaagagtt |
47713304 |
T |
|
| Q |
119 |
cttctcacaaaactttgtccaaaccaaaaagaagcaattggttggtatgttgactgcatgttgcgttactcaaaccgatcaatattcggcgttatggaag |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||| ||| || | ||| |
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| T |
47713303 |
cttctcacaaaactttgtccaaaccaaaaagaagcaattggttggtatgaggactacatgttgcgttactcaaaccaatcaatatttggcattcttgaat |
47713204 |
T |
|
| Q |
219 |
cttcaccttcatatttaaagtggaccttgaaaaatgcaaccgaggtggatcaatttaatcaagttcttgggaacttgatgaggaaact |
306 |
Q |
| |
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||||| | || | || || | ||| |||| |||||||||||||| |||||||| ||||||||| ||||||||||||||||| |
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| T |
47713203 |
ggtcaccaaagttttatatgtcgaacccgaacaatgtaaccgaggtggatccatttaatcgagttcttggaaacttgatgaggaaact |
47713116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 204
Target Start/End: Original strand, 6521617 - 6521808
Alignment:
| Q |
19 |
ctcttatggccaaaacaccgacaaagtaaacgccattggactctgcagaggagatgttaaacctgatgtttgccgcagtcgtctcaatgattcaagagtt |
118 |
Q |
| |
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||||||||| | ||||| |||||||||||||| |||||||| || ||||||||||| |||| ||| ||| | | | | ||||| |||||| ||| |
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| T |
6521617 |
ctcttatggaaacaacactgacaaagtaaacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgtt |
6521716 |
T |
|
| Q |
119 |
cttctcacaaaactttgtccaaaccaaaaagaagcaattggttggt------atgttgactgcatgttgcgttactcaaaccgatcaatatt |
204 |
Q |
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||||| ||| ||| ||||| ||||| ||||||||||||||| |||| ||| || ||||||||||||||||||||||| |||||||| |
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| T |
6521717 |
cttctaacacaacattgtcaaaaccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgttactcaaaccgttcaatatt |
6521808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 6507118 - 6507051
Alignment:
| Q |
19 |
ctcttatggccaaaacaccgacaaagtaaacgccattggactctgcagaggagatgttaaacctgatg |
86 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |||||||| || ||||||||||| ||||| |||| |
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| T |
6507118 |
ctcttatggcgtaaacaccgacaaagtaaacgctattggactgtgtagaggagatgtcaaacccgatg |
6507051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 121 - 167
Target Start/End: Original strand, 6523721 - 6523767
Alignment:
| Q |
121 |
tctcacaaaactttgtccaaaccaaaaagaagcaattggttggtatg |
167 |
Q |
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| T |
6523721 |
tctcacacagctttgtccaaaccaaaaagaagcaattggttggtatg |
6523767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 6513007 - 6512957
Alignment:
| Q |
31 |
aaacaccgacaaagtaaacgccattggactctgcagaggagatgttaaacc |
81 |
Q |
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||||||||||||||||||||| |||||||| || ||||||||||| ||||| |
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| T |
6513007 |
aaacaccgacaaagtaaacgctattggactttgtagaggagatgtcaaacc |
6512957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 6517418 - 6517364
Alignment:
| Q |
19 |
ctcttatggccaaaacaccgacaaagtaaacgccattggactctgcagaggagat |
73 |
Q |
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|||||||||| ||||| ||||||||||||||| |||||||| |||||||||||| |
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| T |
6517418 |
ctcttatggcataaacagcgacaaagtaaacgcaattggactatgcagaggagat |
6517364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 165
Target Start/End: Original strand, 47778037 - 47778081
Alignment:
| Q |
121 |
tctcacaaaactttgtccaaaccaaaaagaagcaattggttggta |
165 |
Q |
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||||||| |||||||||||||| |||| ||||||||||||||||| |
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| T |
47778037 |
tctcacacaactttgtccaaacaaaaaggaagcaattggttggta |
47778081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 5e-22; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 39 - 160
Target Start/End: Complemental strand, 28856632 - 28856511
Alignment:
| Q |
39 |
acaaagtaaacgccattggactctgcagaggagatgttaaacctgatgtttgccgcagtcgtctcaatgattcaagagttcttctcacaaaactttgtcc |
138 |
Q |
| |
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|||||||| ||||||| ||| | ||||||||||||||||| || ||| |||||||||| |||| || |||||||||||||||| ||| || |||||| |
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| T |
28856632 |
acaaagtatacgccataggattatgcagaggagatgttaatccaaatgattgccgcagttgtcttaacaattcaagagttcttctaacacaaaattgtcc |
28856533 |
T |
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| Q |
139 |
aaaccaaaaagaagcaattggt |
160 |
Q |
| |
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|||| ||||||||||||||||| |
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| T |
28856532 |
aaacaaaaaagaagcaattggt |
28856511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 39 - 163
Target Start/End: Complemental strand, 28861909 - 28861785
Alignment:
| Q |
39 |
acaaagtaaacgccattggactctgcagaggagatgttaaacctgatgtttgccgcagtcgtctcaatgattcaagagttcttctcacaaaactttgtcc |
138 |
Q |
| |
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|||||||| ||||||| ||| | ||||||||||||||||| || ||| |||||||||| |||| || |||||||||||||||| ||| || ||||| |
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| T |
28861909 |
acaaagtatacgccataggattatgcagaggagatgttaatccaaatgattgccgcagttgtcttaacaattcaagagttcttctaacacaaaaatgtcc |
28861810 |
T |
|
| Q |
139 |
aaaccaaaaagaagcaattggttgg |
163 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
28861809 |
taaccaaaaagaagcaattggttgg |
28861785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 39 - 157
Target Start/End: Complemental strand, 28831436 - 28831318
Alignment:
| Q |
39 |
acaaagtaaacgccattggactctgcagaggagatgttaaacctgatgtttgccgcagtcgtctcaatgattcaagagttcttctcacaaaactttgtcc |
138 |
Q |
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|||||||| ||||||| ||| | || |||||||||||||| || ||| ||||||| || ||| || |||||||||||||||| ||| || |||||| |
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| T |
28831436 |
acaaagtatacgccataggattatgtagaggagatgttaatccaaatgattgccgccgttatcttaacaattcaagagttcttctaacacaaaattgtcc |
28831337 |
T |
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| Q |
139 |
aaaccaaaaagaagcaatt |
157 |
Q |
| |
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||||||||||||||||||| |
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| T |
28831336 |
aaaccaaaaagaagcaatt |
28831318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 204
Target Start/End: Complemental strand, 28875908 - 28875838
Alignment:
| Q |
134 |
tgtccaaaccaaaaagaagcaattggttggtatgttgactgcatgttgcgttactcaaaccgatcaatatt |
204 |
Q |
| |
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|||||| ||| ||||||||||||||||||| || |||||||| |||||||||||| ||| |||||||| |
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| T |
28875908 |
tgtccataccgaaaagaagcaattggttggattgacaactgcatgctgcgttactcaagccggtcaatatt |
28875838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 1143 - 1076
Alignment:
| Q |
19 |
ctcttatggccaaaacaccgacaaagtaaacgccattggactctgcagaggagatgttaaacctgatg |
86 |
Q |
| |
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|||||||||| ||||||||||||||||||||| |||||||| || ||||||||||| ||||| |||| |
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| T |
1143 |
ctcttatggcgtaaacaccgacaaagtaaacgctattggactgtgtagaggagatgtcaaacccgatg |
1076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 8797 - 8730
Alignment:
| Q |
19 |
ctcttatggccaaaacaccgacaaagtaaacgccattggactctgcagaggagatgttaaacctgatg |
86 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |||||||| || ||||||||||| ||||| |||| |
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|
| T |
8797 |
ctcttatggcgtaaacaccgacaaagtaaacgctattggactgtgtagaggagatgtcaaacccgatg |
8730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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