View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21205_low_38 (Length: 304)

Name: NF21205_low_38
Description: NF21205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21205_low_38
NF21205_low_38
[»] chr2 (1 HSPs)
chr2 (1-297)||(43908868-43909164)


Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 43908868 - 43909164
Alignment:
Q  1 atgcgatacgttaagaaacaaactcctaatgaacctggcatgggaaaagaacatgtaaaggatcaaaatagaaggtatgaaaaatcaagttcacctgttg 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43908868 atgcgatacgttaacaaacaaactcctaatgaacctggcatgggaaaagaacatgtaaaggatcaaaatagaaggtatgaaaaatcaagttcacctgttg 43908967  T
Q  101 ctaaaacttggagaagaaaatctcttcctcaaagagaatcaagtaggatggatacattacaagcaaatgatagagctacttccttagtacctgaaatgat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43908968 ctaaaacttggagaagaaaatctcttcctcaaagagaatcaagtaggatggatacattacaagcaaatgatagagctacttccttagtacctgaaatgat 43909067  T
Q  201 gaggacaacaaccacagggcatgtgcatcctagtctaccagattatgaggacttgtcggatcgtctagcatctctcagaagaacataatgccctatg 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43909068 gaggacaacaaccacagggcatgtgcatcctagtctaccagattatgaggacttgtcggatcgtctagcatctctcagaagaacataatgccctatg 43909164  T

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