View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21205_low_43 (Length: 282)
Name: NF21205_low_43
Description: NF21205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21205_low_43 |
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Alignment Details
Target: chr8 (Bit Score: 95; Significance: 2e-46; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 174 - 268
Target Start/End: Complemental strand, 1361037 - 1360943
Alignment:
| Q |
174 |
ccatcatttgatccattaataaaagacacaagctcttcaattggtcgttcatctactacatgcttttcttctcttttaacttcaacattcttctg |
268 |
Q |
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| T |
1361037 |
ccatcatttgatccattaataaaagacacaagctcttcaattggtcgttcatctactacatgcttttcttctcttttaacttcaacattcttctg |
1360943 |
T |
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Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 1361213 - 1361140
Alignment:
| Q |
1 |
gcgcaaattcttccacttctttgtcagtcattaagtcatgatcaatctcatcatcaaactcaactacaggaccc |
74 |
Q |
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| T |
1361213 |
gcgcaaattcttccacttctttgtcagtcattaagtcatgatcaatctcatcatcaaactcaaccacaggaccc |
1361140 |
T |
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Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 174 - 233
Target Start/End: Complemental strand, 1350382 - 1350323
Alignment:
| Q |
174 |
ccatcatttgatccattaataaaagacacaagctcttcaattggtcgttcatctactaca |
233 |
Q |
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| T |
1350382 |
ccatcatttgatccattaataaaagacagaagctcttcaatggatcgttcatcttctaca |
1350323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 1350639 - 1350576
Alignment:
| Q |
1 |
gcgcaaattcttccacttctttgtcagtcattaagtcatgatcaatctcatcatcaaactcaac |
64 |
Q |
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| T |
1350639 |
gcgcaaattcttccacttctctgtcggtcattgggtcctgatcaatctcatcatcaaactcaac |
1350576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 174 - 243
Target Start/End: Complemental strand, 13590415 - 13590346
Alignment:
| Q |
174 |
ccatcatttgatccattaataaaagacacaagctcttcaattggtcgttcatctactacatgcttttctt |
243 |
Q |
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| T |
13590415 |
ccatcatttgatccattaataaacgacaaaagctcgtcaattggtcgttcatctactacgtgctcttctt |
13590346 |
T |
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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 24618318 - 24618258
Alignment:
| Q |
174 |
ccatcatttgatccattaataaaagacacaagctcttcaattggtcgttcatctactacat |
234 |
Q |
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| T |
24618318 |
ccatcatttgattcattaataaaagacaaaagctcgtcaactgaacgttcatctactacat |
24618258 |
T |
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