View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21205_low_45 (Length: 279)
Name: NF21205_low_45
Description: NF21205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21205_low_45 |
 | |
|
| [»] chr3 (6 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 47254234 - 47253955
Alignment:
| Q |
1 |
attgacagattcctgtctaatgagtctgtcaacagatctaagcttcaattgcttggtgtttcatccatgctcatcgcatcgtaagatctcaaaaattgtg |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47254234 |
attgacagattcctgtccaatgagtctgtcaacagatctaagcttcaattgcttggtgtttcatccatgctcatcgcatcgtaagatctcaaaaattgtg |
47254135 |
T |
|
| Q |
101 |
ttatgtttttgtaattttagtgttagtttgctgttgaattgacaa-nnnnnnnnnnnnnnnnnnnaaatttgcagaaagtatgaagaaatctccccacca |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
47254134 |
ttatgtttttgtaattttagtgttagtttgctgttgaattgacaatttttttttttttactttttaaatttgcagaaagtatgaagaaatctccccacca |
47254035 |
T |
|
| Q |
200 |
aaggctgttgatttctgccagattactgataacacctatgagctgaaacaggtaaatatcatattcatgattaaaatctt |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47254034 |
aaggctgttgatttctgccagattactgataacacctatgagctgaaacaggtaaatatcatattcatgattaaaatctt |
47253955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 165 - 268
Target Start/End: Complemental strand, 47249243 - 47249140
Alignment:
| Q |
165 |
aaatttgcagaaagtatgaagaaatctccccaccaaaggctgttgatttctgccagattactgataacacctatgagctgaaacaggtaaatatcatatt |
264 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||||| || ||||||||||| |||||||||||||||||||| ||| || ||||||||||| |||| |
|
|
| T |
47249243 |
aaatatgcagaaagtatgaagaaattaccccaccaaaggcagtggatttctgccaaattactgataacacctatgacctggaagaggtaaatatcctatt |
47249144 |
T |
|
| Q |
265 |
catg |
268 |
Q |
| |
|
|||| |
|
|
| T |
47249143 |
catg |
47249140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 34 - 92
Target Start/End: Complemental strand, 47242944 - 47242886
Alignment:
| Q |
34 |
agatctaagcttcaattgcttggtgtttcatccatgctcatcgcatcgtaagatctcaa |
92 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
47242944 |
agatctaagcttcagttgcttggtgtttcatccatgctcattgcatcgtaagatctcaa |
47242886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 47249806 - 47249722
Alignment:
| Q |
1 |
attgacagattcctgtctaatgagtctgtcaacagatctaagcttcaattgcttggtgtttcatccatgctcatcgcatcgtaag |
85 |
Q |
| |
|
|||||||||||| | |||| ||| |||||| ||||||||||||||| ||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
47249806 |
attgacagattcttatctattgaacctgtcagcagatctaagcttcagttgctcggtgtttcatccatgctcattgcatcgtaag |
47249722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 170 - 240
Target Start/End: Complemental strand, 47242807 - 47242737
Alignment:
| Q |
170 |
tgcagaaagtatgaagaaatctccccaccaaaggctgttgatttctgccagattactgataacacctatga |
240 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||||| | ||||||||||| || ||||||||||| ||||| |
|
|
| T |
47242807 |
tgcaggaagtatgaagaaatcaccccaccaaaggccatagatttctgccaaatcactgataacacatatga |
47242737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 85
Target Start/End: Original strand, 47265980 - 47266025
Alignment:
| Q |
40 |
aagcttcaattgcttggtgtttcatccatgctcatcgcatcgtaag |
85 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||| |||||||||| |
|
|
| T |
47265980 |
aagcttcaattgctgggtgtttcatccatgtacattgcatcgtaag |
47266025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University