View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21205_low_48 (Length: 261)
Name: NF21205_low_48
Description: NF21205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21205_low_48 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 17 - 255
Target Start/End: Complemental strand, 41307660 - 41307425
Alignment:
| Q |
17 |
aaatataactttgttattaccatctaattacaagtttacaacatgatgcttttgttgttggcgattgttagtctatgtttgatatcaccgttagcgtgcc |
116 |
Q |
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| T |
41307660 |
aaatataactttgtta---ccatctaattacaagtttacaacatcatgcttttgttgttgacgattgttaatctatgtttgatatcaccgtgagcgtgcc |
41307564 |
T |
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| Q |
117 |
agagtcacggtatgatatcaaacatagacggactaaaaatgttaatgtaaaattatgaatggaaggaaaaatgagtgactcaccattgcaacaagaggag |
216 |
Q |
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| T |
41307563 |
agaatcacggtatgatatcaaacatagacagactaaaaatgttaatgtaaaattatgaatggaaggaaaaatgagtgactcaccattgcaacaagaggag |
41307464 |
T |
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| Q |
217 |
aaccatataatgctacagaaacaacaaaacctatgctac |
255 |
Q |
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| T |
41307463 |
aaccatataatgctacagaaacaactaaacctatgctac |
41307425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 192 - 253
Target Start/End: Complemental strand, 41297671 - 41297610
Alignment:
| Q |
192 |
tgactcaccattgcaacaagaggagaaccatataatgctacagaaacaacaaaacctatgct |
253 |
Q |
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|||||||||||||||||||||||||||||||| ||||| ||||||||| | ||||||||||| |
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| T |
41297671 |
tgactcaccattgcaacaagaggagaaccatacaatgcaacagaaacacctaaacctatgct |
41297610 |
T |
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