View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21205_low_5 (Length: 746)
Name: NF21205_low_5
Description: NF21205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21205_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 571; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 571; E-Value: 0
Query Start/End: Original strand, 19 - 605
Target Start/End: Original strand, 37492460 - 37493046
Alignment:
| Q |
19 |
gcaagagctgtggtttactgcaagcctgattccgctcgtctatgcttgcattgtgatgggattgtccactctgcaaattctctgtctcgcaggcatcccc |
118 |
Q |
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| T |
37492460 |
gcaagagctgtggtttactgcaagcctgattccgctcgtctatgcttgcattgtgatgggaatgtccactctgcaaattctctgtctcgcaggcatcccc |
37492559 |
T |
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| Q |
119 |
gctcgctcctctgcgataagtgtaatttcgactcagcaatcgtgcgctgcgtcgatcataaattgtctctctgtcaagtttgtgattggaatacaaatga |
218 |
Q |
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| T |
37492560 |
gctcgctcctctgcgataagtgtaatttcgactcagcaatcgtgcgctgcgtcgatcataaattgtctctctgtcaagtttgtgattggaatacaaatga |
37492659 |
T |
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| Q |
219 |
ctgttttgtattgggacataaacatgtgctactcactttctacgctggttgtccctctttggcagagttatctaagatttggccacatttggttgatgca |
318 |
Q |
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| T |
37492660 |
ctgttttgtattgggacataaacatgtgctactcactttctacactggttgtccctctttggcagagttatctaagatttggccacatttggttgatgca |
37492759 |
T |
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| Q |
319 |
aattcatcaaatgctgcttgggaatcacctagcactagttctttgcctaaaactgaaagcagttccggccacggtcagcatttggagcagcaacctgaaa |
418 |
Q |
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| T |
37492760 |
aattcatcaaatgctgcttgggaatcacctagcactagttctttgcctaaaactgaaagcagttccggccgcggtcagcatttggaacagcaacctgaaa |
37492859 |
T |
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| Q |
419 |
agaatggtttcgttggtttggcgaatgacaagttgggcgaaggagatacgtgtgtcaaatatgaaccttggattgaaaattctcctattattccatcaaa |
518 |
Q |
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| T |
37492860 |
agaatggtttcgttggtttggcgaatgacaagttgggcgaaggagatacgtgtgtcaaatatgaaccttggattgaaaattctcctattattccatcaaa |
37492959 |
T |
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| Q |
519 |
ttcaaactgcacacaatactacaaagatcaaccatttttatttaatcaagactcaaaccaacagaaggttttgatttcgttctaatc |
605 |
Q |
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| T |
37492960 |
ttcaaactgcacacaatactacaaagatcaaccatttttatttaatcaagactcaaaccaacagaaggttttgatttcgttctaatc |
37493046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 664 - 736
Target Start/End: Original strand, 37493105 - 37493177
Alignment:
| Q |
664 |
ggtctagaccctcgttactatccgagccgggtggacgcacataaggcggcaaaacttttccagtgtgcctatg |
736 |
Q |
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| T |
37493105 |
ggtctagaccctcgttactctccgagccgggtggacgcacataaggcggcaaaacttttccagtgtgcctatg |
37493177 |
T |
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