View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21205_low_50 (Length: 256)
Name: NF21205_low_50
Description: NF21205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21205_low_50 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 33302329 - 33302075
Alignment:
| Q |
1 |
ataaggcttgatcaatttaatccctcatatttgcaaattaacattttagtcccttaaattgaaaaacaatcaatctactccctccatcaaaatatttata |
100 |
Q |
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| T |
33302329 |
ataaggcttgatca-tttaatccctcatatttgcaaaataacattttagtcccttaaattgaaaaacaatcaatctactccctccatcaaaatatttata |
33302231 |
T |
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| Q |
101 |
tagtaaagaacaatagaagacgtacatattgacttaagtagtattttcttgcatcaaaacaagcatagaatctttaaaattctgatacaaaatttgagaa |
200 |
Q |
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| T |
33302230 |
tagtaaagaacaatagaagacgtaagtattgacttaagtagtattttcctgcatcaaaacaagcatagaatctttaaaattctgatacaaaattatagaa |
33302131 |
T |
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| Q |
201 |
aatgactaaatcggttgatatttttaaattcaaggactaaaatgttattttaaaaa |
256 |
Q |
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| T |
33302130 |
aatgactaaatcggttgatatttttaaattcaaggactaaaatgttattttaaaaa |
33302075 |
T |
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Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 129 - 224
Target Start/End: Original strand, 21148660 - 21148755
Alignment:
| Q |
129 |
ttgacttaagtagtattttcttgcatcaaaacaagcatagaatctttaaaattctgatacaaaatttgagaaaatgactaaatcggttgatatttt |
224 |
Q |
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| T |
21148660 |
ttgacttaaatagtgttttcttgaatcaaaacaaacataaaacctttaaaattgtgataaagaaattgataaaatgactaaattgattgatatttt |
21148755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 123 - 206
Target Start/End: Complemental strand, 34726671 - 34726588
Alignment:
| Q |
123 |
tacatattgacttaagtagtattttcttgcatcaaaacaagcatagaatctttaaaattctgatacaaaatttgagaaaatgac |
206 |
Q |
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| T |
34726671 |
tacatattgacttaaatagtcttttgctgcatcaaaacaagcatagaaccttttaaattgagatggaaaatttgaaaaaatgac |
34726588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 117 - 250
Target Start/End: Original strand, 2419882 - 2420015
Alignment:
| Q |
117 |
aagacgtacatattgacttaagtagtattttcttgcatcaaaacaagcatagaatctttaaaattctgatacaaaatttgagaaaatgactaaatcggtt |
216 |
Q |
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| T |
2419882 |
aagacatacatatagaattaaatagtcttttgttgcatcaaaacaagtgtaaaacctttaaa-ttgtggtgcaaaatttgaaaaaaagactaaattgatt |
2419980 |
T |
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| Q |
217 |
gatatttttaaattcaag-gactaaaatgttattt |
250 |
Q |
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| T |
2419981 |
gatatttttaaatttaagagactaaattgctattt |
2420015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 97
Target Start/End: Original strand, 41513823 - 41513910
Alignment:
| Q |
13 |
caatttaatccctcatatttgcaaattaacattttagtcccttaaattgaaaaa---caatcaatctactccctccatcaaaatattt |
97 |
Q |
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| T |
41513823 |
caatttagtccttcaaatttgcaaaatagcaagttagtcccttaaattgaaaaatatcaatcaatttagtctctccatcaaaatattt |
41513910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 150 - 250
Target Start/End: Complemental strand, 32710367 - 32710267
Alignment:
| Q |
150 |
tgcatcaaaacaagcatagaatctttaaaattctgatacaaaatttgagaaaatgactaaatcggttgatattttt-aaattcaaggactaaaatgttat |
248 |
Q |
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| T |
32710367 |
tgcatcaaaataagtatagaacctttcaaattgtgagacaaaatttaa-aaaatgactaaaatgtttgatatttttcaatttaaaggactaaattgctat |
32710269 |
T |
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| Q |
249 |
tt |
250 |
Q |
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|| |
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| T |
32710268 |
tt |
32710267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 202
Target Start/End: Original strand, 34069128 - 34069214
Alignment:
| Q |
116 |
gaagacgtacatattgacttaagtagtattttcttgcatcaaaacaagcatagaatctttaaaattctgatacaaaatttgagaaaa |
202 |
Q |
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| T |
34069128 |
gaagacgtacatatcgacttaaatagttctttgttgcatcaaaacaaacctaatctgtttaaaattgtggtacaaaatttgaaaaaa |
34069214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 150 - 238
Target Start/End: Original strand, 40192019 - 40192108
Alignment:
| Q |
150 |
tgcatcaaaacaagcatagaatctttaaaattc-tgatacaaaatttgagaaaatgactaaatcggttgatatttttaaattcaaggact |
238 |
Q |
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||||||||||| | ||||||| |||||||||| || | | || ||||||||||||| ||||| | ||||||||||| |||| ||||||| |
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| T |
40192019 |
tgcatcaaaaccaacatagaacctttaaaatttatggtgcgaagtttgagaaaatgattaaattgattgatatttttcaatttaaggact |
40192108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 230
Target Start/End: Complemental strand, 13054464 - 13054385
Alignment:
| Q |
150 |
tgcatcaaaacaagcatagaatctttaaaattctgatacaaaatttgagaaaatgactaaatcggttgatatttttaaatt |
230 |
Q |
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| T |
13054464 |
tgcatcaaaataagcatagaacctttaaaattgtgggataaaatttaa-aaaatgactaaaatgtttgatatttttcaatt |
13054385 |
T |
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