View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21205_low_52 (Length: 256)
Name: NF21205_low_52
Description: NF21205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21205_low_52 |
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Alignment Details
Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 3228271 - 3228323
Alignment:
| Q |
30 |
gattactttcttaaatgcatgcatttggctaatttttgtcgttgattcatgat |
82 |
Q |
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| T |
3228271 |
gattactttcttaaatgcatgcatttggctaatttttgtcgttgattcatgat |
3228323 |
T |
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Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 31 - 82
Target Start/End: Original strand, 3338651 - 3338702
Alignment:
| Q |
31 |
attactttcttaaatgcatgcatttggctaatttttgtcgttgattcatgat |
82 |
Q |
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| T |
3338651 |
attactttcttaaatgcatgcatttggctattttttttcgttgattcatgat |
3338702 |
T |
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