View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21205_low_57 (Length: 253)
Name: NF21205_low_57
Description: NF21205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21205_low_57 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 19 - 253
Target Start/End: Original strand, 12702778 - 12703012
Alignment:
| Q |
19 |
actgtctacaaaaattccaaaagaatcaaaatggaattgtgtatggcaaagcatgtatgttaacctcaggcataaattgcgcccgaggccatagagattt |
118 |
Q |
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| T |
12702778 |
actgtctacaaaaattccaaaagaatcaaaatggaattgtgtatggcaaagcaagtatgttaacctcaggcataaattgcgcccgaggccatagagattt |
12702877 |
T |
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| Q |
119 |
tgaacaccgaaaggcatcggtcttctgtttcttggagacatgctttgcttctatcttcactgaactaaataaccaatcttgatccaatgcatcaaatagt |
218 |
Q |
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| T |
12702878 |
tgaacaccgaaaggcatcggtcttctgtttcttggagacatgctttgcttctatcttcactgaactaaataaccaatcttgatccaatgcatcaaatagt |
12702977 |
T |
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| Q |
219 |
tcatatgctatcggctgaatgtgaagtaaggattt |
253 |
Q |
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| T |
12702978 |
tcatatgctatcggctgaatgtgaagtaaggattt |
12703012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 19 - 253
Target Start/End: Original strand, 8206565 - 8206800
Alignment:
| Q |
19 |
actgtctacaaaaattccaaaagaa-tcaaaatggaattgtgtatggcaaagcatgtatgttaacctcaggcataaattgcgcccgag---gccatagag |
114 |
Q |
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|||||||||||||||||||||| || ||||||||||| ||||||||| || |||| ||||| | ||||||||||| |||| ||||||| || ||| || |
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| T |
8206565 |
actgtctacaaaaattccaaaaaaaatcaaaatggaactgtgtatggtaatgcatatatgtcagcctcaggcatatattgagcccgaggttgcaataaag |
8206664 |
T |
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| Q |
115 |
attttgaacaccgaaaggcatcggtcttctgtttcttggagacatgctttgcttctatcttcactgaactaaataaccaatcttgatccaatgcatcaaa |
214 |
Q |
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| T |
8206665 |
attttgagcactgaaaggcatcagtcttctgtttcttcgagatgggtattgtttctttcggtactgagctaaataaccaatcttgatccaatggacccaa |
8206764 |
T |
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| Q |
215 |
tagttcatatgctatcggctgaatgtgaagtaaggattt |
253 |
Q |
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| T |
8206765 |
---ttcatatgttatcggctgaatgtgaagtaaggattt |
8206800 |
T |
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