View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21205_low_64 (Length: 250)

Name: NF21205_low_64
Description: NF21205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21205_low_64
NF21205_low_64
[»] chr7 (1 HSPs)
chr7 (19-247)||(449991-450211)
[»] chr3 (13 HSPs)
chr3 (55-222)||(9329877-9330041)
chr3 (68-208)||(9395314-9395454)
chr3 (132-222)||(9336581-9336671)
chr3 (146-209)||(9695615-9695678)
chr3 (147-222)||(41980895-41980970)
chr3 (147-222)||(41985669-41985744)
chr3 (145-193)||(9756450-9756498)
chr3 (147-186)||(9485969-9486008)
chr3 (147-186)||(13864281-13864320)
chr3 (147-222)||(9343886-9343961)
chr3 (147-193)||(9686753-9686799)
chr3 (139-204)||(16011695-16011760)
chr3 (146-194)||(9613916-9613964)
[»] chr6 (7 HSPs)
chr6 (139-222)||(7025797-7025880)
chr6 (146-222)||(7012861-7012937)
chr6 (138-222)||(7041537-7041621)
chr6 (139-222)||(7029854-7029937)
chr6 (147-222)||(7046880-7046955)
chr6 (138-222)||(9170858-9170942)
chr6 (138-222)||(9159486-9159570)
[»] chr5 (1 HSPs)
chr5 (144-211)||(18571163-18571230)
[»] chr8 (1 HSPs)
chr8 (147-204)||(13170684-13170741)


Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 247
Target Start/End: Original strand, 449991 - 450211
Alignment:
Q  19 gagcattcatttgatggctcaggctgacccgtggtatggtgggagaagaaaattcttggtggcgagtagtgagttccagttgttgctagtgatttgctat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  449991 gagcattcatttgatggctcaggctgacccgtggtatggtgggagaagaaaattcttggtggcgagtagtgagttccagttgttgctagtgatttgctat 450090  T
Q  119 acaaacggtgaccgtgttactgtatggattgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagatacaattttgt 218  Q
    ||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  450091 acaaacggtg--------actgtatggattgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgaggaatttaggagatacaattttgt 450182  T
Q  219 tcttaggcgatctgtattccttctctgct 247  Q
    |||||||||||||||||||||| ||||||    
T  450183 tcttaggcgatctgtattccttttctgct 450211  T

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Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 55 - 222
Target Start/End: Complemental strand, 9330041 - 9329877
Alignment:
Q  55 tggtgggagaagaaaattcttggtggcgagtagtgagttccagttgttgctagtgatttgctatacaaacggtgaccgtgttactgtatggattgatgtg 154  Q
    |||||||| ||| ||||||||||| | ||||||||||||  |||||||||| |||  | | |||  |||   | | |||||| |||||||||||||||||    
T  9330041 tggtgggaaaagtaaattcttggtcgagagtagtgagtttgagttgttgctggtggatagatatgaaaa---ttatcgtgttcctgtatggattgatgtg 9329945  T
Q  155 tttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagatacaattttgttctt 222  Q
    ||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||   ||||||||||    
T  9329944 tttaggcttgatgagaaagagaaaaggtgggtcaagttggcgaatttaggagataaggttttgttctt 9329877  T

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Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 68 - 208
Target Start/End: Complemental strand, 9395454 - 9395314
Alignment:
Q  68 aaattcttggtggcgagtagtgagttccagttgttgctagtgatttgctatacaaacggtgaccgtgttactgtatggattgatgtgtttaggcttgatg 167  Q
    ||||||||||| | || |||||| || |||||||||||||||  |   |||| ||| | ||| ||||||| |||| ||||||||||||||||||||||||    
T  9395454 aaattcttggtcgagactagtgactttcagttgttgctagtggatatatataaaaatgatgatcgtgttattgtaaggattgatgtgtttaggcttgatg 9395355  T
Q  168 agaaggagaaaaagtgggtcaagttgacgaatttaggagat 208  Q
    ||||| ||||||||||||| |||||||| ||||||||||||    
T  9395354 agaagcagaaaaagtgggtgaagttgactaatttaggagat 9395314  T

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Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 132 - 222
Target Start/End: Complemental strand, 9336671 - 9336581
Alignment:
Q  132 gtgttactgtatggattgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagatacaattttgttctt 222  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||||   ||||||||||    
T  9336671 gtgttcctgtatggattgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttctt 9336581  T

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Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 146 - 209
Target Start/End: Original strand, 9695615 - 9695678
Alignment:
Q  146 attgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagata 209  Q
    |||||||| || |||||||||||||||||||| ||||||||||||||||| |||||||| ||||    
T  9695615 attgatgtattcaggcttgatgagaaggagaagaagtgggtcaagttgaccaatttaggggata 9695678  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 147 - 222
Target Start/End: Complemental strand, 41980970 - 41980895
Alignment:
Q  147 ttgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagatacaattttgttctt 222  Q
    |||||||||||||||||| | |||| ||||| || |||||||||||||||| |||||| |||| | ||||||||||    
T  41980970 ttgatgtgtttaggcttgctaagaaagagaagaaatgggtcaagttgacgagtttaggggatagagttttgttctt 41980895  T

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Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 147 - 222
Target Start/End: Complemental strand, 41985744 - 41985669
Alignment:
Q  147 ttgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagatacaattttgttctt 222  Q
    |||||||||| || ||||||||||||||||| || |||||||||||| ||| |||||| |||| | ||||||||||    
T  41985744 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttctt 41985669  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 145 - 193
Target Start/End: Complemental strand, 9756498 - 9756450
Alignment:
Q  145 gattgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttg 193  Q
    ||||||||||| ||||||||||||||| ||||||| |||||||||||||    
T  9756498 gattgatgtgtataggcttgatgagaaagagaaaaggtgggtcaagttg 9756450  T

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Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 186
Target Start/End: Original strand, 9485969 - 9486008
Alignment:
Q  147 ttgatgtgtttaggcttgatgagaaggagaaaaagtgggt 186  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  9485969 ttgatgtgtttaggcttgatgagaaggagaagaagtgggt 9486008  T

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Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 186
Target Start/End: Complemental strand, 13864320 - 13864281
Alignment:
Q  147 ttgatgtgtttaggcttgatgagaaggagaaaaagtgggt 186  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  13864320 ttgatgtgtttaggcttgatgagagggagaaaaagtgggt 13864281  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 222
Target Start/End: Complemental strand, 9343961 - 9343886
Alignment:
Q  147 ttgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagatacaattttgttctt 222  Q
    |||||||||||| ||||||||||| |||||| |||||||| ||||| || | |||||| ||||   ||||||||||    
T  9343961 ttgatgtgtttaagcttgatgagatggagaagaagtgggtgaagttaacaactttaggggatagtgttttgttctt 9343886  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 193
Target Start/End: Complemental strand, 9686799 - 9686753
Alignment:
Q  147 ttgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttg 193  Q
    ||||||| || |||||||||||||| ||||| |||||||||||||||    
T  9686799 ttgatgtattcaggcttgatgagaacgagaagaagtgggtcaagttg 9686753  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 204
Target Start/End: Original strand, 16011695 - 16011760
Alignment:
Q  139 tgtatggattgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttagg 204  Q
    |||| |||||||||||||| |||| |||||||||||||| || ||||| || ||| | ||||||||    
T  16011695 tgtaaggattgatgtgtttgggctcgatgagaaggagaagaattgggttaaattgcctaatttagg 16011760  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 194
Target Start/End: Original strand, 9613916 - 9613964
Alignment:
Q  146 attgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttga 194  Q
    |||||| | |||| |||||||||||||||||| |||||||| |||||||    
T  9613916 attgatttttttaagcttgatgagaaggagaagaagtgggtgaagttga 9613964  T

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Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 139 - 222
Target Start/End: Complemental strand, 7025880 - 7025797
Alignment:
Q  139 tgtatggattgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagatacaattttgttctt 222  Q
    |||| |||||||| |||||| |||| ||||||||||||| |||||||| |||||||||| |||||||||||   ||||||||||    
T  7025880 tgtaaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacgagtttaggagatagggttttgttctt 7025797  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 146 - 222
Target Start/End: Complemental strand, 7012937 - 7012861
Alignment:
Q  146 attgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagatacaattttgttctt 222  Q
    |||||| |||||| |||| ||||||||||||| |||||||| |||||||| | |||||||||||  |||||||||||    
T  7012937 attgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacaagtttaggagataggattttgttctt 7012861  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 138 - 222
Target Start/End: Complemental strand, 7041621 - 7041537
Alignment:
Q  138 ctgtatggattgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagatacaattttgttctt 222  Q
    |||||||||||||| ||||||  ||| ||||||||||||| |||||||| |||||||| | |||||| ||||   ||||||||||    
T  7041621 ctgtatggattgatttgtttaaacttaatgagaaggagaagaagtgggtgaagttgactagtttaggggatagggttttgttctt 7041537  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 222
Target Start/End: Complemental strand, 7029937 - 7029854
Alignment:
Q  139 tgtatggattgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagatacaattttgttctt 222  Q
    |||| |||||||| |||||| |||| ||||||||||||| |||||||| |||||||||| ||| || ||||   ||||||||||    
T  7029937 tgtaaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacgagtttcggggatagggttttgttctt 7029854  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 222
Target Start/End: Complemental strand, 7046955 - 7046880
Alignment:
Q  147 ttgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagatacaattttgttctt 222  Q
    ||||| |||||| |||| ||||||||||||| |||||||| ||||| |||| |||||| |||| | ||||||||||    
T  7046955 ttgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttaacgagtttaggggataaagttttgttctt 7046880  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 222
Target Start/End: Complemental strand, 9170942 - 9170858
Alignment:
Q  138 ctgtatggattgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagatacaattttgttctt 222  Q
    ||||| |||||||| |||||| |||| ||||||||||||| |||||||| || || |||| |||||| ||||   ||||||||||    
T  9170942 ctgtaaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttctt 9170858  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 222
Target Start/End: Original strand, 9159486 - 9159570
Alignment:
Q  138 ctgtatggattgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagatacaattttgttctt 222  Q
    ||||| |||||||| |||||| |||| | ||||||||||| |||||||| || || |||| |||||| ||||   ||||||||||    
T  9159486 ctgtaaggattgatttgtttaagcttaacgagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttctt 9159570  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 211
Target Start/End: Complemental strand, 18571230 - 18571163
Alignment:
Q  144 ggattgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagataca 211  Q
    |||||||| | |||| |||||||||||||||||| |||||||| || ||||||| |||||| ||||||    
T  18571230 ggattgatttctttaagcttgatgagaaggagaagaagtgggtgaaattgacgagtttaggggataca 18571163  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 204
Target Start/End: Original strand, 13170684 - 13170741
Alignment:
Q  147 ttgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttagg 204  Q
    |||||||||| || |||||||| |||||||| || |||||||||||| ||| ||||||    
T  13170684 ttgatgtgttcagacttgatgaaaaggagaagaaatgggtcaagttggcgagtttagg 13170741  T

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