View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21205_low_65 (Length: 249)
Name: NF21205_low_65
Description: NF21205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21205_low_65 |
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Alignment Details
Target: chr7 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 9 - 233
Target Start/End: Original strand, 12820616 - 12820839
Alignment:
| Q |
9 |
tgaacctaagcctggcacttacaggctttaggggttggtgaaaagatcataatctttcagatattttcctagtggctgggttccagatatggaaccagta |
108 |
Q |
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| T |
12820616 |
tgaacctaagcctggcacttacaagctttcggggtcggtgaaaagatcctaatctttcagatattttcctagtggctgggttccagatatggaaccagta |
12820715 |
T |
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| Q |
109 |
gtttcgatgctcagttgtgttagaagtaccaaacaaacatagcaatccattacatgaaccaaccattcgggtgaagttattaaactcgagtcgtttgtaa |
208 |
Q |
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| T |
12820716 |
gttttgatattcagttgtgttagaactaccaaacaaacatagcaatccattacatgaaccaaccattcgggtgaaattattaaactcgagt-gtttgtaa |
12820814 |
T |
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| Q |
209 |
cagtcgctgtccacagtgatcaatg |
233 |
Q |
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| T |
12820815 |
cagtcgctgtcgacggtgatcaatg |
12820839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 106
Target Start/End: Complemental strand, 29641954 - 29641889
Alignment:
| Q |
41 |
ggttggtgaaaagatcataatctttcagatattttcctagtggctgggttccagatatggaaccag |
106 |
Q |
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| T |
29641954 |
ggttggtgacaagttcctaatttttccgatattatccttgtggctgggttccagatacggaaccag |
29641889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 106
Target Start/End: Original strand, 29821105 - 29821143
Alignment:
| Q |
68 |
gatattttcctagtggctgggttccagatatggaaccag |
106 |
Q |
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| T |
29821105 |
gatattatcctagtggctgggttccagatctggaaccag |
29821143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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